| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,557,233 – 6,557,328 |
| Length | 95 |
| Max. P | 0.511695 |
| Location | 6,557,233 – 6,557,328 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 61.28 |
| Shannon entropy | 0.76876 |
| G+C content | 0.47045 |
| Mean single sequence MFE | -27.67 |
| Consensus MFE | -8.10 |
| Energy contribution | -10.27 |
| Covariance contribution | 2.17 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.511695 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6557233 95 - 27905053 --UCGGCGAAGUCACAAUUUAUUUCAAAGGC-----UUCAUUCAGCUGCCGAAUGGCAGAGUUAGCUGGAAUCCAGCGGAACUUCUUAAUUGAGGCCGGCCA --..((((((((........)))))...(((-----((((.....(((((....)))))((((.(((((...)))))..)))).......))))))).))). ( -35.90, z-score = -3.33, R) >droWil1.scaffold_181089 4464673 99 - 12369635 --UUGCCAAAGGCAAACUUCGAUUGCCAUACAAGUCUUCGCAAAAUGGGGCAAUGACAAGGCCAAAAGGACAUCAGACAAACUGGCCCAAAGCCCUCGAAA- --(((((...)))))..(((((((((.............))))....((((..((....(((((....(........)....)))))))..))))))))).- ( -22.92, z-score = -0.25, R) >droSim1.chr3R 12713177 95 + 27517382 --UCGGCGAAGUCAAAAUGUAUUGCAAAGGC-----UUCAUUCAGCUGCCGAAUGGCAGAGUUUGCUGGAAUCCAGCGGAACUUCUUAAUUGAGGCCGGCCA --..(((...(.(((......))))...(((-----((((.....(((((....)))))((((((((((...))))).))))).......))))))).))). ( -33.70, z-score = -1.86, R) >droSec1.super_0 5735937 95 + 21120651 --UCGGCGAAGUCAAAAUGUAUUGCAAAGGC-----UUCAUUCAGCUCCCGAAUGGCAGAGUUUGCUGGAAUCCAGCGGAACUUUUUAAUUGAGGCCGGCCA --..(((...(.(((......))))...(((-----((((....(((.......)))((((((((((((...))))).))))))).....))))))).))). ( -29.30, z-score = -0.85, R) >droYak2.chr3R 10596527 95 - 28832112 --UCGGCAAAGUCAAAAAGUAAUUCAAAGGC-----UUCAUUCGGCUGCCGAAUGGCACAACUUGCUGGAUUCCAGCGGAACUUCUUAAUUGAGGCCGGCCA --..(((.(((((...............)))-----))....((((((((....))).....(((((((...)))))))..............)))))))). ( -27.16, z-score = -0.72, R) >droEre2.scaffold_4770 2699442 95 + 17746568 --UCGGCAAAGUCAAAAAGUAAUUCAAAGGC-----UUCAUUCAGCUGCCGAAUGGCAGAAUUUGCUGGAAUCCAGCGGAACUUCUUAAUUGAGGCCGGCCA --..(((.........((....))....(((-----((((.....(((((....)))))..((((((((...))))))))..........))))))).))). ( -31.80, z-score = -2.31, R) >droVir3.scaffold_13047 12071721 76 + 19223366 AAUUGACAAACCCAGAGUUCUCUAGUCAGACUGUCGAGCACUCGA--AACCAAGAGUAAUGUCUAAUUGUACUUCGUU------------------------ ((((((((........((((..(((.....)))..))))((((..--......))))..)))).))))..........------------------------ ( -12.90, z-score = 0.08, R) >consensus __UCGGCAAAGUCAAAAUGUAAUUCAAAGGC_____UUCAUUCAGCUGCCGAAUGGCAGAGUUUGCUGGAAUCCAGCGGAACUUCUUAAUUGAGGCCGGCCA ..(((((......................................(((((....))))).....(((((...))))).................)))))... ( -8.10 = -10.27 + 2.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:01 2011