| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,556,770 – 6,556,866 |
| Length | 96 |
| Max. P | 0.861373 |
| Location | 6,556,770 – 6,556,866 |
|---|---|
| Length | 96 |
| Sequences | 8 |
| Columns | 122 |
| Reading direction | reverse |
| Mean pairwise identity | 60.34 |
| Shannon entropy | 0.70341 |
| G+C content | 0.56296 |
| Mean single sequence MFE | -37.79 |
| Consensus MFE | -10.11 |
| Energy contribution | -11.17 |
| Covariance contribution | 1.07 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.27 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.861373 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6556770 96 - 27905053 -----------------GUAGU--CUGGACUGAAA---ACGG-GGGGCUGGAUCCCUGUGG-GUCCUGAAAAAUGUGCCC--GCAUGUUUGCAGUGGCUAACAGCGGCUCCAGGGAUCCGAA -----------------..(((--((...(((...---.)))-.)))))(((((((((.((-((((((........((((--(((....))).).)))...))).))))))))))))))... ( -39.20, z-score = -1.97, R) >droSim1.chr3R 12712720 99 + 27517382 -----------------GUAGU--CUGGACUGAAAAGUACGG-GUGCCUGGAACCCUGUGG-GUCCUGAAAAAUGUGCCC--GCAUGUUUGCAGUGGCUAACAGCGGCUCCAGGGAUCCGAA -----------------.....--....(((....))).(((-((.((((((.((((((.(-((((((..(((((((...--.))))))).))).)))).)))).)).)))))).))))).. ( -43.50, z-score = -3.68, R) >droSec1.super_0 5735475 99 + 21120651 -----------------GUAGU--CUGGACUGAAAAGUACGG-GUGCCUGGAACCCUGUGG-GUCCUGAAAAAUGUGCCC--GCAUGUUUGCAGUGGCUAACAGCGGCUCCAGGGAUCCGAA -----------------.....--....(((....))).(((-((.((((((.((((((.(-((((((..(((((((...--.))))))).))).)))).)))).)).)))))).))))).. ( -43.50, z-score = -3.68, R) >droYak2.chr3R 10595964 111 - 28832112 -------GUAGUCUGGUGUUGCCGCAGGACUGAAAGGUACGG-GCGCCUUGAACCCUGUGG-GUCCUGAAAAAUGUCGCC--GCAUGUUUGCAGUGGCUAACAGCGGCUCCAGGGAUCCCAA -------.((((((.(((....))).)))))).(((((....-..)))))((.(((((.((-((((((......(((((.--(((....))).)))))...))).)))))))))).)).... ( -41.70, z-score = -0.75, R) >droEre2.scaffold_4770 2698993 94 + 17746568 -----------------GUAGU--CUGGACUGA-----ACAG-GCGCCUGGAACCCUGUGA-GUCCUGAAAAAUGUGGUC--ACAUGCUUGCAGUGGCUAACAGCGGCUCCAGGGAUCCGGA -----------------...((--(((......-----.)))-))..(((((.(((((.((-((((((.......(((((--((.((....))))))))).))).)))))))))).))))). ( -42.30, z-score = -3.45, R) >droAna3.scaffold_13340 1202310 120 - 23697760 CCAGCUUGCAGUCGCUGCGGGUGGCGGGACUACAAGGGUCAGAGUGUUUAGGGCAUAGCGGAGUCCUGAAAAAUGUGGCC--GCUUGUUUGCGGUGGCUAACAGCGACUUCAGGGACUCAGC ....((((.((((((((..(((.((.(.(..((((((((((.(...((((((((........))))))))...).)))))--.))))).).).)).)))..)))))))).))))........ ( -52.10, z-score = -2.85, R) >dp4.chr2 1398488 73 + 30794189 ----------------------------------------------CCCUAACUCCUGAGC-CCCCUGGUCGUUGUUCUUCGGCAUGUUUUCUAUGGCUAACAGAGGGUGGAGUCCUUCC-- ----------------------------------------------.....(((((...((-((.(((((((........))))..(((......)))...))).)))))))))......-- ( -20.00, z-score = -0.26, R) >droPer1.super_6 1374604 73 + 6141320 ----------------------------------------------CCCUAACUCCUGAGC-CCCCUGGUCGUUGUUCUUCGGCAUGUUUUCUAUGGCUAACAGAGGGUGGAGUCCUUCC-- ----------------------------------------------.....(((((...((-((.(((((((........))))..(((......)))...))).)))))))))......-- ( -20.00, z-score = -0.26, R) >consensus _________________GUAGU__CUGGACUGAAA___ACGG_GUGCCUGGAACCCUGUGG_GUCCUGAAAAAUGUGCCC__GCAUGUUUGCAGUGGCUAACAGCGGCUCCAGGGAUCCGAA ...............................................(((((.(((((....((((((....((((......)))).....))).)))...))).)).)))))......... (-10.11 = -11.17 + 1.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:04:00 2011