Locus 9415

Sequence ID dm3.chr3R
Location 6,545,581 – 6,545,699
Length 118
Max. P 0.717809
window12909

overview

Window 9

Location 6,545,581 – 6,545,699
Length 118
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 93.50
Shannon entropy 0.09125
G+C content 0.39548
Mean single sequence MFE -29.08
Consensus MFE -27.43
Energy contribution -27.99
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -1.34
Structure conservation index 0.94
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.49
SVM RNA-class probability 0.717809
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 6545581 118 - 27905053
AUGUUACUUGUGCAUGUAUUUCCCACUUAUUAUUCUGCAAUUGAGGCUUGAAUAGAGUCCAAUGGACACCAACACCCGCAAUGCGCACUCACUCAAUUGAUAUGCAUGUGUUUGUAAA
...((((..(..(((((((..................((((((((...........((((...))))..........((.....)).....))))))))..)))))))..)..)))). ( -27.05, z-score =  -0.74, R)
>droSec1.super_0 5724198 118 + 21120651
AUGUUACUAAUGUAUGUAUAUUCCACUCAUUAUUCUGCAAUUGAGGCUUGUACAGUGUCCAAUGGACACCAACACCCGCAAUGCGCACUCACUCAAUUGAUAUGCAUGUGUUUGUAAA
...((((.((..(((((((((......((......))((((((((...(((...((((((...))))))..)))...((.....)).....)))))))))))))))))..)).)))). ( -30.30, z-score =  -1.62, R)
>droSim1.chr3R 12701214 118 + 27517382
AUGUUACUAAUGUAUGUAUAUUCCACUCAUUAUUCUGCAAUUGAGGCUUGGACAGUGUCCAUUGGACACCAACACCCGCAAUCCGCACUCACUCAAUUGAUAUGCAUGUGUUUGUAAA
...((((.((..(((((((((......((......))((((((((....((...((((((...))))))......))((.....)).....)))))))))))))))))..)).)))). ( -29.90, z-score =  -1.66, R)
>consensus
AUGUUACUAAUGUAUGUAUAUUCCACUCAUUAUUCUGCAAUUGAGGCUUGAACAGUGUCCAAUGGACACCAACACCCGCAAUGCGCACUCACUCAAUUGAUAUGCAUGUGUUUGUAAA
...((((.((..(((((((((................((((((((.........((((((...))))))........((.....)).....)))))))))))))))))..)).)))). (-27.43 = -27.99 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:57 2011