| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,543,550 – 6,543,606 |
| Length | 56 |
| Max. P | 0.998560 |
| Location | 6,543,550 – 6,543,606 |
|---|---|
| Length | 56 |
| Sequences | 6 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 68.59 |
| Shannon entropy | 0.59903 |
| G+C content | 0.45313 |
| Mean single sequence MFE | -16.62 |
| Consensus MFE | -9.41 |
| Energy contribution | -8.70 |
| Covariance contribution | -0.71 |
| Combinations/Pair | 1.87 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.40 |
| SVM RNA-class probability | 0.998560 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6543550 56 + 27905053 UCUCCCUGGGGGGCUUUAACUCCGCAGAGAAACUACUUUGACUUCAAAAAGUGUAU ..((.(((.((((......)))).))).))...((((((........))))))... ( -14.10, z-score = -0.99, R) >droSim1.chr3R 12699086 55 - 27517382 -UCUCCCGGGGGGCAUUAACUCCUCAGGGACACUACUUUGACUUCAAAAAGUGUAU -...(((((((((......)))))).)))(((((..((((....)))).))))).. ( -18.50, z-score = -2.69, R) >droSec1.super_0 5722099 56 - 21120651 UCUGCCUGGGGGGCAUUAACUCCUCAGGGACACUACUUUGACUUCAAAAAGUGUAU ....(((((((((......))))))))).(((((..((((....)))).))))).. ( -21.10, z-score = -3.74, R) >droYak2.chr3R 10581370 55 + 28832112 -UCUCCUUGGGGGCAUUAACUCCGCAGGGAAACUACUCUGACUUCAGAAAGUAUAU -..((((((((((......)))).)))))).(((..((((....)))).))).... ( -17.20, z-score = -2.63, R) >droEre2.scaffold_4770 2684873 54 - 17746568 --UCUCCUCGGGGCAUUAGCUCCGCAGGGAAACUACUUUGACUUCAAAAAGUAUAU --((.(((((((((....)))))).)))))...((((((........))))))... ( -18.20, z-score = -3.79, R) >droGri2.scaffold_14830 3231937 55 - 6267026 -UUGCUGCGGUGUCAGACGACGACUUAGGUAGUUGAGUUGAGGUUAAGAUAUAUUC -........(((((.(((..((((((((....))))))))..)))..))))).... ( -10.60, z-score = -0.30, R) >consensus _UUCCCUGGGGGGCAUUAACUCCGCAGGGAAACUACUUUGACUUCAAAAAGUAUAU ...((((.(((((......))))).))))....((((((........))))))... ( -9.41 = -8.70 + -0.71)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:56 2011