| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,541,701 – 6,541,807 |
| Length | 106 |
| Max. P | 0.942221 |
| Location | 6,541,701 – 6,541,807 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 71.88 |
| Shannon entropy | 0.54860 |
| G+C content | 0.40976 |
| Mean single sequence MFE | -23.67 |
| Consensus MFE | -11.50 |
| Energy contribution | -11.15 |
| Covariance contribution | -0.35 |
| Combinations/Pair | 1.61 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.942221 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6541701 106 - 27905053 GAUUCCGAACUGAACCCGGCGGCCUAAAGGCUUGCCAAUGUUGGUCAAAACAACUGCACACGUCAGCAAAUAA-GAAUAAAUUUGUAAAAAAUUACGGAACUAUAAA- ..(((((..((((....(((((((....))).))))...((((.......))))........))))(((((..-......)))))..........))))).......- ( -24.50, z-score = -2.05, R) >droSim1.chr3R 12697244 94 + 27517382 GAUUCCGAACCGAACCCGGCGGCCUAAAGGCUUGCCAAUUUUG------------GCACACGUCGGCAAAUAA-GAAUAAAUUCGUAAAAAAUCACGGAACUAUAAA- ..(((((........(((((((((....))).(((((....))------------)))..)))))).......-(((....)))...........))))).......- ( -26.00, z-score = -2.48, R) >droSec1.super_0 5720408 106 + 21120651 GAUUCCGAACCGAACCCGGCGGCCUAAAGGCUUGCCAAUGUUGGCCAAAACAACUGCACACGUCGGCAAAUAA-GAAUAAAUUCGUAAAAAAUCACGGAACUAUAAA- ..(((((..((((....(((((((....))).))))...((((.......))))........)))).......-(((....)))...........))))).......- ( -25.20, z-score = -1.48, R) >droYak2.chr3R 10579573 106 - 28832112 GAUUUCGAACCAAACCCCGUGGCCCAAAGGCUUGCCAAUGUUGGCCAAAACAACUGCACACGUUGGCAAAUAA-GAAAAAAUACGUUAAAAAUCACGGAACUAUAAA- ................((((((((....)))((((((((((..((..........))..))))))))))....-...................))))).........- ( -25.30, z-score = -2.02, R) >droEre2.scaffold_4770 2683018 106 + 17746568 GAUUUCGAACCAAGUCCGGCGGCCUAAAGGAUUGCCAAUGUUGGCCAAAACAACUGCACACGUCGGCAAAUAA-GAAUAAAUACGUGAAAAAUCACGGAACUAUAAA- ...(((.......(.((((((.((....))..(((....((((.......)))).)))..)))))))......-.........(((((....)))))))).......- ( -22.50, z-score = -0.79, R) >droWil1.scaffold_181089 4445621 102 - 12369635 --UUUUGUUUUGGACGCAACAG----AAAACCUGUCGAAAGGCGAAACGGAAAAACUAAGAGCAAACAAAUGACGUGGAAAUCUAAAGCAAAUGAUAAAAAUGAAAAU --.((((((((((((((.((((----.....))))(....))))...........(((....((......))...)))...)))))))))))................ ( -18.50, z-score = -2.00, R) >consensus GAUUCCGAACCGAACCCGGCGGCCUAAAGGCUUGCCAAUGUUGGCCAAAACAACUGCACACGUCGGCAAAUAA_GAAUAAAUUCGUAAAAAAUCACGGAACUAUAAA_ ..(((((..((((....(((((((....))).))))....))))...........((........))............................)))))........ (-11.50 = -11.15 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:55 2011