| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,522,381 – 6,522,434 |
| Length | 53 |
| Max. P | 0.608573 |
| Location | 6,522,381 – 6,522,434 |
|---|---|
| Length | 53 |
| Sequences | 6 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 78.15 |
| Shannon entropy | 0.41217 |
| G+C content | 0.40000 |
| Mean single sequence MFE | -9.38 |
| Consensus MFE | -7.00 |
| Energy contribution | -7.33 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.608573 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6522381 53 + 27905053 CCACCUCCAGCAAAAACGUGUGUUUUUGUUGCGCUGCUAUUUGUU--UAAUUUAA- .......((((((((((....))))))))))..............--........- ( -9.30, z-score = -1.30, R) >droSim1.chr3R 12677456 53 - 27517382 CCACCUCCAGCAAAAACGUGUGUUUUUGUUGCGCUGCUAUUUGUU--UAAUUUAA- .......((((((((((....))))))))))..............--........- ( -9.30, z-score = -1.30, R) >droSec1.super_0 5701276 53 - 21120651 CCACCUCCAGCAAAAACGUGUGUUUUUGUUGCGCUGCUAUUUGUU--UAAUUUAA- .......((((((((((....))))))))))..............--........- ( -9.30, z-score = -1.30, R) >droEre2.scaffold_4770 2662184 53 - 17746568 CCACCCCCAGCAAGAACGUGUGUUGCUGCUGAGCUGCUAUUUGUU--UAAUUUAA- .......((((((.(.....).)))))).(((((........)))--))......- ( -8.60, z-score = -0.27, R) >droYak2.chr3R 10560005 53 + 28832112 CCACCGCCAGCAAGAACGUGUGUUUUUGUUGCGCUGCUAUUUGUU--UAAUUUAA- .....((((((((((((....)))))))))).))...........--........- ( -13.10, z-score = -1.94, R) >droMoj3.scaffold_6540 5612057 55 + 34148556 CUAAAUGAACCACUGGCUUGUUCUAUAGUUCAGUU-UUAUCUGUUGCUCACGCGAA ....(((((..(((((((........)).))))))-))))...((((....)))). ( -6.70, z-score = 0.54, R) >consensus CCACCUCCAGCAAAAACGUGUGUUUUUGUUGCGCUGCUAUUUGUU__UAAUUUAA_ .......((((((((((....))))))))))......................... ( -7.00 = -7.33 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:54 2011