| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,913,702 – 6,913,802 |
| Length | 100 |
| Max. P | 0.749042 |
| Location | 6,913,702 – 6,913,802 |
|---|---|
| Length | 100 |
| Sequences | 7 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 68.26 |
| Shannon entropy | 0.64082 |
| G+C content | 0.60116 |
| Mean single sequence MFE | -34.61 |
| Consensus MFE | -17.41 |
| Energy contribution | -18.84 |
| Covariance contribution | 1.43 |
| Combinations/Pair | 1.54 |
| Mean z-score | -0.87 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.749042 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6913702 100 + 23011544 UAUCUUACUGUCCAGCUGCUGCUCCUCACCGGAGGAUAGCUUCGGCCGCUGCUGAAGGGGAU-GCUGCGGACUCGCUCCCUCGGGCGUGUCCUUGUCAAAG ((((((.((((((.((....))(((.....)))))))))(((((((....))))))))))))-)....((((.(((((....))))).))))......... ( -38.00, z-score = -0.86, R) >droSim1.chr2L 6709554 100 + 22036055 UAACUUACUCCCCAGCUGCUGCUCCUCGCCGGAGGAUAGCUUCGGCCGCUGCUGAAGGGGAU-GCUGCGGACUCGCUCCCUCGGGCGUGUCCUUGUCAAAG ........(((((....((((.(((((....)))))))))((((((....))))))))))).-.....((((.(((((....))))).))))......... ( -41.50, z-score = -1.58, R) >droYak2.chr2L 16328405 100 - 22324452 CAUCUUACUGCCCAGCUGCUGCUCCUCGACAAAGGAUAACUUCUGCCGCUGCUGAAGCGGAU-GCUGCGGACUCGUUCCUUCGGGCGUGUCCUUGUCAAAG .......((((.((((.((.((((((......))))........)).)).))))..))))..-.....((((.(((((....))))).))))......... ( -29.10, z-score = -0.21, R) >droEre2.scaffold_4929 15827197 100 + 26641161 AAUCUUACUGUCCAGCUGCUGCUCCUGGACGGAGGAUAGCUUCUGCCGUUGCUGAAGGGGAU-GCUGCGGACUCGUUCCUUCGGGCGUGUCCUUGUCAAAA .(((((.((((((((.........)))))))))))))(((.(((.((.........))))).-)))..((((.(((((....))))).))))......... ( -33.20, z-score = -0.38, R) >droSec1.super_3 2447374 100 + 7220098 UAACUUACUCCCCAGCUGCUGCUCCUCGCCGGAGGAUAGCUUCGGCCGCUGCUGAAGGGGAU-GCUGCGGACUCGCUCCCUCGGGCGUGUCCUUGUCAAAG ........(((((....((((.(((((....)))))))))((((((....))))))))))).-.....((((.(((((....))))).))))......... ( -41.50, z-score = -1.58, R) >droAna3.scaffold_12916 8494394 89 + 16180835 ------AGGUACUAGUGGCU--CCCUGCUCAAUGGACAUCUUUUUCUUUGGUUGGUUUG----GCAGCGGACUCGCCCCCUCUGGCGUGUCCUUGUCAAAA ------..((.(((.((((.--....)).)).)))))..................((((----((((.((((.((((......)))).)))))))))))). ( -27.40, z-score = -0.89, R) >anoGam1.chr3R 52172282 75 - 53272125 -----------------------GCUGCUCGGCCGCCGAGUUGUGCAUCGGUUCCGGCGAGUUGCCGAAGGUCAGCUUCCGC-GGCAUGACC--GUCGACG -----------------------((.(((((.(((((((........))))...)))))))).))(((.((((((((.....-))).)))))--.)))... ( -31.60, z-score = -0.63, R) >consensus UAUCUUACUGCCCAGCUGCUGCUCCUCGCCGGAGGAUAGCUUCUGCCGCUGCUGAAGGGGAU_GCUGCGGACUCGCUCCCUCGGGCGUGUCCUUGUCAAAG ..............((.((..(((((((.(((.((..........)).))).)).)))))...)).))((((.((((......)))).))))......... (-17.41 = -18.84 + 1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:22:30 2011