| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,507,689 – 6,507,785 |
| Length | 96 |
| Max. P | 0.606135 |
| Location | 6,507,689 – 6,507,785 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 85.20 |
| Shannon entropy | 0.26607 |
| G+C content | 0.35029 |
| Mean single sequence MFE | -22.14 |
| Consensus MFE | -16.38 |
| Energy contribution | -16.70 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.606135 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6507689 96 + 27905053 CUGAGAGUAUUGGAUUAUUCAUUAGUUAAGCUAGUUAACAAAUUUUUGGAAACUGGCAACUUAAUUAUGUUUA-UGUGCUCAGUUAAGA-GGGCAACU (((((((((......))))).))))....(((((((..(((....)))..)))))))................-(((.(((......))-).)))... ( -22.70, z-score = -1.81, R) >droSim1.chr3R 12661488 97 - 27517382 CUGAGAGUAUUGGAUUAUUCAUUAGUUAAGCUAGUUAACAAACUUUUGGAAACUGGCAACUUAAUUAUGUUUA-UGUGCUCAAUUAAGAAGGGCAACU (((((((((......))))).))))....(((((((..(((....)))..)))))))..(((((((..((...-...))..)))))))..((....)) ( -22.60, z-score = -1.96, R) >droSec1.super_0 5686987 97 - 21120651 CUGAGAGUAUUGGAUUAUUCAUUAGUUAAGCUAGUUAACCAACUUUUGGAAACUGGCAACUUAAUUAUGUUUA-UGAGCUCAAUUAAGAAGGGCAACU (((((((((......))))).))))....(((((((..(((.....))).)))))))..(((((((..(((..-..)))..)))))))..((....)) ( -22.00, z-score = -1.59, R) >droEre2.scaffold_4770 2647425 83 - 17746568 CUGAGAGUAUUGGAAUAUUCAUUAGUUGGGCUGGUUAACAAACUUUUGGAAACUGGCAACUCAAUUAAGUUUAGUGGGCACGG--------------- ((((((((((....)))))).((((((((((..(((..(((....)))..)))..))...))))))))..)))).........--------------- ( -18.20, z-score = -1.25, R) >droYak2.chr3R 10545244 97 + 28832112 CUGAGAGUACUGGAAUAUUCAUUAGUUAAGCUGGUUAACAAACUUUUGGAAACUGGCAACUUAAUUAAGUUUA-UGUGCUCAGUUGGUGAGGGCACCU ....((((((..((((.....((((((((((..(((..(((....)))..)))..))...)))))))))))).-.))))))....((((....)))). ( -25.20, z-score = -1.44, R) >consensus CUGAGAGUAUUGGAUUAUUCAUUAGUUAAGCUAGUUAACAAACUUUUGGAAACUGGCAACUUAAUUAUGUUUA_UGUGCUCAGUUAAGAAGGGCAACU ....((((((.....((..(((.(((((((((((((..(((....)))..)))))))...)))))))))..))..))))))................. (-16.38 = -16.70 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:50 2011