| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,482,759 – 6,482,854 |
| Length | 95 |
| Max. P | 0.682467 |
| Location | 6,482,759 – 6,482,854 |
|---|---|
| Length | 95 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.21 |
| Shannon entropy | 0.32571 |
| G+C content | 0.33595 |
| Mean single sequence MFE | -10.80 |
| Consensus MFE | -10.07 |
| Energy contribution | -9.75 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.14 |
| Mean z-score | -0.75 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.682467 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6482759 95 + 27905053 UUAUUAUAAAGUCAAAUUUUGU--UUCGUUUAAAUGCGAUCUUUACGCUGAAAGCGUGUGUCCCUGUCCCU--------UUUCCCCGAAAACUCAA---AACUGAAAA------------ ...........(((..(((((.--.((((......))))....(((((.....))))).............--------..............)))---)).)))...------------ ( -10.50, z-score = -0.27, R) >droSim1.chr3R 12630808 95 - 27517382 UUAUUAUAAAGUCAAAUUUUGU--UUCGUUUAAAUGCGAUCUUUACGCUGAAAGCGUGUGUCCCUGUCCCU--------UUUUCCCGAAAACUCAA---AACUGAAAA------------ ...........(((..((((((--((((...(((.(.(((...(((((.....))))).......))).).--------)))...)))))...)))---)).)))...------------ ( -10.80, z-score = -0.22, R) >droSec1.super_0 5661032 95 - 21120651 UUAUUAUAAAGUCAAAUUUUGU--UUCGUUUAAAUGCGAUCUUUACGCUGAAAGCGUGUGUCCCUGUCCCU--------UUUUCCCGAAAACUCAA---AACUGAAAA------------ ...........(((..((((((--((((...(((.(.(((...(((((.....))))).......))).).--------)))...)))))...)))---)).)))...------------ ( -10.80, z-score = -0.22, R) >droYak2.chr3R 10517501 102 + 28832112 UUAUUAUAAAGUCAAAUUUUGU--UUCGUUUAAAUGCGAUCUUUACGCUGAAAGCGUGUGUCCCUGUCCCUGUC-CCUUUUUUUCCGAAAUCUCUA---AACCAAAAA------------ ...............((((((.--.((((......))))....(((((.....)))))................-..........)))))).....---.........------------ ( -10.20, z-score = -0.44, R) >droEre2.scaffold_4770 2621036 103 - 17746568 UUAUUAUAAAGUCAAAUUUUGU--UUCGUUUAAAUGCGAUCUUUACGCUGAAAGCGUGUGUCCCUGUCCCUUUUUCCCUUUUUCCCGAAAACUGAA---AACCAAAAA------------ ...........(((..(((((.--.((((......))))....(((((.....)))))...........................)))))..))).---.........------------ ( -11.60, z-score = -0.53, R) >droAna3.scaffold_13340 23071924 89 - 23697760 UUAUUAUAAAGUCAAAUUUUGU--UUCGUUUAAAUGCGAUCUUUACGCCGAAAGCGUGUGUCCCU--------------UUUUCCCAAAAAACAAA---AACCGAAAU------------ ................((((((--(((((......))))....((((((....).))))).....--------------...........))))))---)........------------ ( -13.30, z-score = -1.53, R) >dp4.chr2 23817836 85 - 30794189 UUAUUAUAAAGUCAAAUUUUGU--UUCGUUUAAAUGCGAUCUUUACGCUGAAAGCGUGUGUCCCU--------------UUUUCCCAAAAACUGAA---AACCA---------------- ...........(((..(((((.--.((((......))))....(((((.....))))).......--------------......)))))..))).---.....---------------- ( -11.90, z-score = -1.20, R) >droPer1.super_0 10990797 89 - 11822988 UUAUUAUAAAGUCAAAUUUUGU--UUCGUUUAAAUGCGAUCUUUACGCUGAAAGCGUGUGUCCCU--------------UUUUCCCAAAAACUGAA---AACCAAAAU------------ ...........(((..(((((.--.((((......))))....(((((.....))))).......--------------......)))))..))).---.........------------ ( -11.90, z-score = -1.14, R) >droWil1.scaffold_181108 293350 106 + 4707319 UUAUUAUAAAGUCAAAUUUUGUAUUUCGUUUAAAUGCGAUCUUUACGCUGAAAGCGUGUGUCCCU--------------UUUUCCCAAAAAAUAACCCUAACCCUAACCCAAUCCCAAUA ................(((((....((((......))))....(((((.....))))).......--------------......))))).............................. ( -10.10, z-score = -1.25, R) >droVir3.scaffold_13047 1473212 74 + 19223366 UUAUUAUAAAGUCAAAUUUUGU--UUCGUUUAAAUACGAUCUUUACGCUGAAGGCGUGUGUCCCU--------------UUUUCCCAAAA------------------------------ ................(((((.--.((((......))))....(((((.....))))).......--------------......)))))------------------------------ ( -9.10, z-score = -0.45, R) >droMoj3.scaffold_6540 5562790 74 + 34148556 UUAUUAUAAAGUCAAAUUUUGU--UUCGUUUAAAUGCGAUCUUUACGCUGAAAGCGUGUGUCCCU--------------UUUUCCCAAAA------------------------------ ................(((((.--.((((......))))....(((((.....))))).......--------------......)))))------------------------------ ( -9.30, z-score = -0.98, R) >droGri2.scaffold_14906 9410339 88 - 14172833 UUAUUAUAAAGUCAAAUUUUGU--UUCGUUUAAAUGCGAUCUUUACGCUGAAAGCGUGUGUCCCU---------------UUUCCCAAAAACCAAA---AACCAAAAA------------ ................(((((.--.((((......))))....(((((.....))))).......---------------.....)))))......---.........------------ ( -10.10, z-score = -0.81, R) >consensus UUAUUAUAAAGUCAAAUUUUGU__UUCGUUUAAAUGCGAUCUUUACGCUGAAAGCGUGUGUCCCU______________UUUUCCCAAAAACUCAA___AACCAAAAA____________ ................(((((....((((......))))....(((((.....)))))...........................))))).............................. (-10.07 = -9.75 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:47 2011