| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,475,102 – 6,475,206 |
| Length | 104 |
| Max. P | 0.866462 |
| Location | 6,475,102 – 6,475,206 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 93.53 |
| Shannon entropy | 0.08830 |
| G+C content | 0.56257 |
| Mean single sequence MFE | -35.23 |
| Consensus MFE | -32.17 |
| Energy contribution | -32.07 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.866462 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6475102 104 - 27905053 CCCCUUCGCCUGCCUGCCCCGCGUCUAACGACGAAUCCCCAUAAAUAUUUCGGCCUGCUUACGCACACGACCUGAGUUGCAGGAUAUUAUGGGGAUUGGGCAUC ..............(((((..((((....))))(((((((((((.....(((...(((....)))..)))((((.....))))...)))))))))))))))).. ( -40.10, z-score = -4.07, R) >droSim1.chr3R 12623106 101 + 27517382 CCCCUUCGUCCGGCUGCCCCGCGUCUA---ACGAAUCCCCAUAAAUAUUUCGGGCUGCUUACGCACACGACCUGAGGUGCAGGAUAUUAUGGGGAUUGGGCAUC .(((.((((..(((.((...)))))..---))))((((((((((.....(((...(((....)))..)))((((.....))))...)))))))))).))).... ( -34.00, z-score = -0.86, R) >droSec1.super_0 5653403 99 + 21120651 CCCCUUCGUCCGCCUG-CCCGCGUCUA---ACGAAUCCCCAUAAAUAUUUCGGGCUGCUUACGCACACGACCUGAGGUGCAGGAUAUU-UGGGGAUUGGGCAUC ..............((-(((.((....---.))((((((((..(((((.(((...(((....)))..)))((((.....)))))))))-))))))))))))).. ( -31.60, z-score = -0.60, R) >consensus CCCCUUCGUCCGCCUGCCCCGCGUCUA___ACGAAUCCCCAUAAAUAUUUCGGGCUGCUUACGCACACGACCUGAGGUGCAGGAUAUUAUGGGGAUUGGGCAUC .......((((..........(((......)))(((((((((((.....(((...(((....)))..)))((((.....))))...)))))))))))))))... (-32.17 = -32.07 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:46 2011