| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,439,429 – 6,439,519 |
| Length | 90 |
| Max. P | 0.877546 |
| Location | 6,439,429 – 6,439,519 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 87.22 |
| Shannon entropy | 0.24893 |
| G+C content | 0.31456 |
| Mean single sequence MFE | -12.73 |
| Consensus MFE | -12.36 |
| Energy contribution | -12.24 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.877546 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6439429 90 - 27905053 -----CGUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGAAAAAAGCAAAAAGAGUAUACGACAAACAAAUAAAAAUUAAAAG -----.(((((((((....(((.((((.....))))))))))))))))............................................... ( -12.30, z-score = -1.27, R) >droSim1.chr3R 12586944 90 + 27517382 -----CGUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGAAAAAAGCAAAAAGAGUAUACGACAAACAAAUAAAAAUAAAAAG -----.(((((((((....(((.((((.....))))))))))))))))............................................... ( -12.30, z-score = -1.55, R) >droSec1.super_0 5617405 90 + 21120651 -----CGUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGAAAAAAGCAAAAAGAGUAUACGACAAACAAAUAAAAAUAAAAAG -----.(((((((((....(((.((((.....))))))))))))))))............................................... ( -12.30, z-score = -1.55, R) >droYak2.chr3R 10471384 90 - 28832112 -----CGUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGAAAAAAGCAAAAAGAGUAUACGACAAACAAAUAAAAAUUAAAAG -----.(((((((((....(((.((((.....))))))))))))))))............................................... ( -12.30, z-score = -1.27, R) >droEre2.scaffold_4770 2576132 90 + 17746568 -----CGUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGAAAAAAGCAAAAAGAGUAUACGACAAACAAAUAAAAAUUAAAAG -----.(((((((((....(((.((((.....))))))))))))))))............................................... ( -12.30, z-score = -1.27, R) >droAna3.scaffold_13340 23027628 86 + 23697760 -----CGUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGAAGAA---GCAAAGAGUAUACGAC-AUCAAACAUCAACAAAACA -----.(((((((((....(((.((((.....))))))))))))))))........---................-................... ( -12.30, z-score = 0.10, R) >droVir3.scaffold_13047 1422169 82 - 19223366 CAUAUUAUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGAA------GCAAGAAGUAUACGACAUACAAGCAAACA------- .........((((((....((.(((((.....)))))..))....(((((...------.......)))))..)))))).........------- ( -15.30, z-score = -1.11, R) >consensus _____CGUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGAAAAAAGCAAAAAGAGUAUACGACAAACAAAUAAAAAUAAAAAG ......(((((((((....(((.((((.....))))))))))))))))............................................... (-12.36 = -12.24 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:44 2011