| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,405,690 – 6,405,780 |
| Length | 90 |
| Max. P | 0.929537 |
| Location | 6,405,690 – 6,405,780 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 82.65 |
| Shannon entropy | 0.29702 |
| G+C content | 0.47790 |
| Mean single sequence MFE | -22.40 |
| Consensus MFE | -19.63 |
| Energy contribution | -20.27 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.929537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6405690 90 + 27905053 UGCUCUGCGGUUUCGUUUGUGCCACAAAACGCAGACAGUAUGACGACGCCGAAAGCCGCAAGAGUGAAAAACAAACAGAA---AAAAAAACCG .((((((((((((((((((((........))))))).((......))...).))))))).)))))...............---.......... ( -23.80, z-score = -2.02, R) >droSim1.chr3R 12551896 87 - 27517382 UGCUCUGCGGUUUCGUUUGUGCCACAAAACGCAGACAGUAUGACGACGCCGAAAGCCGCAAGAGU-AAAAACAAACAGAA-----AAAAACCG (((((((((((((((((((((........))))))).((......))...).))))))).)))))-).............-----........ ( -24.70, z-score = -2.62, R) >droSec1.super_0 5583776 88 - 21120651 UGCUCUGCGGUUUCGUUUGUGCCACAAAACGCAGACAGUAUGACGACGCCGAAAGCCGCAGGAGUGAAAAACAAACAGAA-----AAAAACCG .((((((((((((((((((((........))))))).((......))...).)))))))).))))...............-----........ ( -23.80, z-score = -1.52, R) >droYak2.chr3R 10436491 93 + 28832112 UGCUCUGCGGUUUCGUUUGUGCCACAAAACGCAGACAGUAUGACGACGCCAAAAGCCGCAAGAGUGAAAAACAAACAAAAUAAGAAAAAACCG .((((((((((((.(((((((........))))))).((......)).....))))))).)))))............................ ( -23.10, z-score = -2.25, R) >dp4.chr2 23733093 72 - 30794189 UGCGCUGCGGUUUCGUUUGUGCCACAAAACGCAGACAGUAUGACGACGCCGAAAGCCGCAAAAACAACAAAA--------------------- ((((((.((((.(((((((((........))))))).(.....))).))))..)).))))............--------------------- ( -19.50, z-score = -0.57, R) >droPer1.super_0 10908546 72 - 11822988 UGCGCUGCGGUUUCGUUUGUGCCACAAAACGCAGACAGUAUGACGACGCCGAAAGCCGCAAAAACAACAAAA--------------------- ((((((.((((.(((((((((........))))))).(.....))).))))..)).))))............--------------------- ( -19.50, z-score = -0.57, R) >consensus UGCUCUGCGGUUUCGUUUGUGCCACAAAACGCAGACAGUAUGACGACGCCGAAAGCCGCAAGAGUGAAAAACAAACAGAA_____AAAAACCG .((((((((((((.(((((((........))))))).((......)).....))))))).)))))............................ (-19.63 = -20.27 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:43 2011