| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,398,567 – 6,398,670 |
| Length | 103 |
| Max. P | 0.988796 |
| Location | 6,398,567 – 6,398,670 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 86.03 |
| Shannon entropy | 0.23991 |
| G+C content | 0.51346 |
| Mean single sequence MFE | -26.60 |
| Consensus MFE | -20.00 |
| Energy contribution | -21.00 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.94 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.34 |
| SVM RNA-class probability | 0.988796 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6398567 103 + 27905053 UGCAAA-GUGUUUGUAUUGCCACAGAUUGCCCCCG---------CUAGAGCCCCUCUAUAUGCCCCGAUAUA----UAUCGCCCCAUCGAUCCCCAUUCUGUGGCAAAUGCAAUAUG ......-(((((.(((((((((((((.((.....(---------((((((...)))))...))..((((...----.)))).............)).)))))))).)))))))))). ( -26.40, z-score = -3.52, R) >droSim1.chr3R 12544810 113 - 27517382 UGCAAAAGUGUUUGUAUUGCCACAGAUUGCCCCCGAAGUCCCCGCUGCAGCCCCUUUCCAUGCCCCGAUAUA----UAUCGCCCAAUCGAUCCCCAUUCUGUGGCGAAUGCAAUAUG .......(((((.(((((((((((((.((....(((..........(((...........)))..((((...----.)))).....))).....)).)))))))).)))))))))). ( -26.00, z-score = -2.60, R) >droSec1.super_0 5576696 112 - 21120651 UGCAAA-GUGUUUGUAUUGCCACAGAUUGCCCCCGAAGUCACCGCUGUAGCCCCUCUAUAUGCCCCGAUAUA----UAUCGCCCCAUCGAUCCCCAUUCUGUGGCGAAUGCAAUAUG ......-(((((.(((((((((((((.((....(((.......(((((((.....))))).))..((((...----.)))).....))).....)).)))))))).)))))))))). ( -28.70, z-score = -3.33, R) >droYak2.chr3R 10429130 105 + 28832112 UGCAAA-GUGUUUGUAUUGCCACAGAUUGCCCCCG-----------AAGUCCCCUCUACAUGCCCCGAUAUACAUAUAUCGCCCCAUCGAUCCCCAUUCUGCGGCGAAUGCAAUAUG ......-(((((.((((((((.((((.((....((-----------(((......))........((((((....)))))).....))).....)).)))).))).)))))))))). ( -22.40, z-score = -1.99, R) >droEre2.scaffold_4770 2534842 110 - 17746568 UGCAAA-GUGUUUGUAUUGCCACAGAUUGCCCCCGCAGUCCCCGCUGCUGCCCUCCAAU-UGCCC-GAUAUA----UAUCGCCCCAUCGAUCCCCAUUCUGUGGCGAAUGCAAUAUG ......-(((((.(((((((((((((.((.....(((((....)))))...........-....(-(((...----.)))).............)).)))))))).)))))))))). ( -29.50, z-score = -3.29, R) >consensus UGCAAA_GUGUUUGUAUUGCCACAGAUUGCCCCCG_AGUC_CCGCUGCAGCCCCUCUAUAUGCCCCGAUAUA____UAUCGCCCCAUCGAUCCCCAUUCUGUGGCGAAUGCAAUAUG ...........(((((((((((((((.((..............((....))..............(((((......))))).............)).)))))))).))))))).... (-20.00 = -21.00 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:42 2011