Locus 9401

Sequence ID dm3.chr3R
Location 6,390,119 – 6,390,215
Length 96
Max. P 0.967257
window12890

overview

Window 0

Location 6,390,119 – 6,390,215
Length 96
Sequences 4
Columns 97
Reading direction reverse
Mean pairwise identity 75.65
Shannon entropy 0.39787
G+C content 0.40782
Mean single sequence MFE -26.38
Consensus MFE -14.32
Energy contribution -16.82
Covariance contribution 2.50
Combinations/Pair 1.20
Mean z-score -2.53
Structure conservation index 0.54
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.78
SVM RNA-class probability 0.967257
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 6390119 96 - 27905053
UCUCAAAACAGCAAUUAAGUUUUUGGUAGACUACAUGGUCACACUGGG-CUUUUUCGCACUUAACAGUGUGCCCAUGAUAGAAUAUCAAGCAAAAGA
.....................(((((((..((((((((.(((((((.(-(......))......))))))).))))).)))..)))))))....... ( -26.80, z-score =  -2.97, R)
>droEre2.scaffold_4770 2526390 96 + 17746568
UCCCACAAAAGCAAUCAUGCUUUUGAUACACUGCAUGGUCACACUGGG-CCCUUUCGGUGUUAGCAGUGUGGCCAUGAUAGAAUAUUAAGCAAAACG
.....((((((((....)))))))).....((((((((((((((((((-(((....)).)))..))))))))))))).)))................ ( -35.80, z-score =  -4.28, R)
>droYak2.chr3R 10420253 96 - 28832112
UCUCCCAAGAGCAACCAUGAUUUUGAUAGACUGCAUGGUCACACUGGG-CUCCUUCGCUGCUAACAGUGUGACCAUAAUACAAUAAAAAGCAAAAGC
(((..(((((.((....)).)))))..)))....((((((((((((((-(.........)))..))))))))))))..................... ( -25.80, z-score =  -2.34, R)
>droSim1.chr3R 12536063 86 + 27517382
UCUCAAAACAGCAAAUAUGUUUUUGGUAG-----------ACACUGGGUCUUUUUCGCACUUAAAAGUGUGCCCAUGUUAGAAUAUUAGGCAAAACA
..........((....(((((((.....(-----------(((.(((((.......(((((....)))))))))))))))))))))...))...... ( -17.11, z-score =  -0.54, R)
>consensus
UCUCAAAACAGCAAUCAUGUUUUUGAUAGACUGCAUGGUCACACUGGG_CUCUUUCGCACUUAACAGUGUGCCCAUGAUAGAAUAUUAAGCAAAACA
.....................(((((((.....(((((((((((((..................)))))))))))))......)))))))....... (-14.32 = -16.82 +   2.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:41 2011