| Sequence ID | dm3.chr2L |
|---|---|
| Location | 660,764 – 660,822 |
| Length | 58 |
| Max. P | 0.996639 |
| Location | 660,764 – 660,822 |
|---|---|
| Length | 58 |
| Sequences | 3 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 88.89 |
| Shannon entropy | 0.15734 |
| G+C content | 0.72710 |
| Mean single sequence MFE | -19.70 |
| Consensus MFE | -18.53 |
| Energy contribution | -18.53 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.04 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.96 |
| SVM RNA-class probability | 0.996639 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 660764 58 - 23011544 ---CGCAACACCACCACGCCCUCCGCCCCUUCGCUGCACCACUUUCCCGGUGGUGCGGCCC ---.............................(((((((((((.....))))))))))).. ( -19.90, z-score = -2.85, R) >droEre2.scaffold_4929 722882 53 - 26641161 --------CACCACCACGCCCUCCGCCCCUUCGCAGCACCACUUUCCCGGUGGUGCGGCCC --------.........(((....((......)).((((((((.....))))))))))).. ( -19.00, z-score = -3.28, R) >droYak2.chr2L 651646 61 - 22324452 CACCACAGCACCACCACGCCCUCCGCCCCUUCGCUGCACCACUUUCCCGGUGGUGCGGCCC .......((........)).............(((((((((((.....))))))))))).. ( -20.20, z-score = -2.99, R) >consensus ___C_CA_CACCACCACGCCCUCCGCCCCUUCGCUGCACCACUUUCCCGGUGGUGCGGCCC .................(((....((......)).((((((((.....))))))))))).. (-18.53 = -18.53 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:34 2011