| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,386,139 – 6,386,233 |
| Length | 94 |
| Max. P | 0.951059 |
| Location | 6,386,139 – 6,386,233 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.77 |
| Shannon entropy | 0.50433 |
| G+C content | 0.39255 |
| Mean single sequence MFE | -19.73 |
| Consensus MFE | -11.36 |
| Energy contribution | -11.65 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.951059 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6386139 94 + 27905053 --------------UCGAACUAUGCC--GAAAUUUAAUUUGUCUACAAAGUCAA----------GCGACGUGUAGAUAAAUCAAUCAAAAUGGCGCGCACACACGACCACACAAAAAAAA --------------(((.....((((--(..((((.(((((((((((..(((..----------..))).)))))))))))......))))..)).)))....))).............. ( -19.10, z-score = -2.11, R) >droSim1.chr3R 12532149 91 - 27517382 --------------UCGAACUAUGCC--GAAAUUUAAUUUGUCUACAAAGUCAA----------GCGACGUGUAGAUAAAUCAAUCAAAAUGGCGCGCACACACGACCACACAAAAA--- --------------(((.....((((--(..((((.(((((((((((..(((..----------..))).)))))))))))......))))..)).)))....)))...........--- ( -19.10, z-score = -2.02, R) >droSec1.super_0 5564437 91 - 21120651 --------------UCGAACUAUGCC--GAAAUUUAAUUUGUCUACAAAGUCAA----------GCGACGUGUAGAUAAAUCAAUCAAAAUGGCGCGCACACACGACCACACAAAAC--- --------------(((.....((((--(..((((.(((((((((((..(((..----------..))).)))))))))))......))))..)).)))....)))...........--- ( -19.10, z-score = -2.09, R) >droYak2.chr3R 10416213 91 + 28832112 --------------UCGAACUAUGCC--GAAAUUUAAUUUGUCUACAAAGUCAA----------GCGACGUGUAGAUAAAUCAAUCAAAAUGGCGCGCACACACGACCAUACAGAGA--- --------------(((........)--))......(((((((((((..(((..----------..))).)))))))))))........((((((.(....).)).)))).......--- ( -19.20, z-score = -1.54, R) >droEre2.scaffold_4770 2522554 91 - 17746568 --------------UCGAACUAUGCC--GAAAUUUAAUUUGUCUACAAAGUCAA----------GCGACGUGUAGAUAAAUCAAUCAAAAUGGCGCGCACACACGGCCGUACAAAAA--- --------------(((........)--))......(((((((((((..(((..----------..))).)))))))))))........(((((.((......))))))).......--- ( -21.90, z-score = -2.06, R) >droAna3.scaffold_13340 22980136 90 - 23697760 --------------UCGAACUAUGCC--GAAGUUUAAUUUGCCUACAAAGUCA-----------GCGGCCUUCAGAUAAAUCAAUCAAGGGGGCGCUCGCAAACCACCCAUUAAAAC--- --------------(((........)--)).((((..((((....))))((.(-----------(((.((((..(((......)))..)))).)))).)))))).............--- ( -17.50, z-score = -0.29, R) >dp4.chr2 23714020 93 - 30794189 --------------UUGAACUAUGCC--AAAAUUUAAUUUGUCUACAAAGUCAGGCGACGUGUCGCGACGUGUAGAUAAAUCAAUCAAAAUGGCGCGUCAGAGCAGAGC----------- --------------.........(((--(....((.(((((((((((..(((..((((....))))))).))))))))))).))......))))((......)).....----------- ( -26.50, z-score = -2.25, R) >droPer1.super_0 10889393 93 - 11822988 --------------UUGAACUAUGCC--AAAAUUUAAUUUGUCUACAAAGUCAGGCGACGUGUCGCGACGUGUAGAUAAAUCAAUCAAAAUGGCGCGCCAGAGCAGAGC----------- --------------.........(((--(....((.(((((((((((..(((..((((....))))))).))))))))))).))......))))((......)).....----------- ( -26.50, z-score = -2.12, R) >droWil1.scaffold_181108 179066 85 + 4707319 --------------UCAAACUAUGCC--AAAAUUUAAUUUGUCUACAAAGUAAA----------GCGACAUGUAGAUAAAUCAAUCAAAAUGGCGCGUUGUCGUGUUCCAA--------- --------------.........(((--(....((.(((((((((((..((...----------...)).))))))))))).))......))))(((....))).......--------- ( -16.40, z-score = -1.87, R) >droVir3.scaffold_13047 1356887 90 + 19223366 --------------UUCUACUGUGUUUAAAAAUUUAAUUUGUCUACAAAGUAAC----------UCGACGUGUAGAUAAAUCAAUCAAGAUGGCGCGUCGUGCCAACCGAAAAA------ --------------(((...................(((((((((((..((...----------...)).))))))))))).........((((((...))))))...)))...------ ( -18.30, z-score = -1.63, R) >droMoj3.scaffold_6540 5430896 75 + 34148556 --------------UUGGAGUAUGCC--AAAAUUUAAUUUGUCUACAAAGUAAC----------UCGACGUGUAGAUAAAUCAAUCAAAACUCAACAGAAA------------------- --------------((((......))--))......(((((((((((..((...----------...)).)))))))))))....................------------------- ( -12.70, z-score = -1.72, R) >droGri2.scaffold_14906 9283438 102 - 14172833 AUUUUUCGACUACUUACGACUAUGCC--AAAUUUUAAUUUGUCUACAAAGUAAC----------UCGACGUGUCGAUAAAUCAAUCAAAAUGGCGCGUCGUGCCAGCGCAAAAA------ .((((.((.((...((((((..((((--(....((.(((((((.(((..((...----------...)).))).))))))).))......))))).))))))..)))).)))).------ ( -20.50, z-score = -0.88, R) >consensus ______________UCGAACUAUGCC__AAAAUUUAAUUUGUCUACAAAGUCAA__________GCGACGUGUAGAUAAAUCAAUCAAAAUGGCGCGCACACACGACCCAACAA______ ......................((((.......((.(((((((((((..((................)).))))))))))).)).......))))......................... (-11.36 = -11.65 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:39 2011