| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,382,290 – 6,382,375 |
| Length | 85 |
| Max. P | 0.756154 |
| Location | 6,382,290 – 6,382,375 |
|---|---|
| Length | 85 |
| Sequences | 6 |
| Columns | 89 |
| Reading direction | forward |
| Mean pairwise identity | 82.83 |
| Shannon entropy | 0.31951 |
| G+C content | 0.50517 |
| Mean single sequence MFE | -29.58 |
| Consensus MFE | -18.78 |
| Energy contribution | -20.03 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.756154 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6382290 85 + 27905053 UCUUCGGUGUUUCGGUGGUUUUUGUUUUCCAA-ACGAACAAACCGAAAACAAGGCCUCUUC---AAGGGGGCCGUGGAUAAUGCCGGUA ...(((((.(((((((....((((((.....)-)))))...))))))).((.(((((((..---..))))))).))......))))).. ( -30.30, z-score = -2.30, R) >droAna3.scaffold_13340 22976959 81 - 23697760 UCUUACGUGUUGCUG-GGCUUUCGUUUCGAAACAGGAACAAAACGCAAACAAGGACACUGG----CCGGGGCGAUCGAUGGUUCCA--- ......(((((..((-.(((((.(((((......))))).))).))...))..)))))...----..(((((........))))).--- ( -19.80, z-score = 0.49, R) >droEre2.scaffold_4770 2518787 82 - 17746568 UCUUCGGUGUUUCGG-GGCUUU-GUUUUCGAA-GCGAACUAGCCGAAAACAAGGCCUCUUC----AAGGGGCCGUGGAUAAUGCCGGUA ...((((((((..((-((((((-(((((((..-((......)))))))))))))))))(((----(.(....).)))).)))))))).. ( -33.10, z-score = -2.70, R) >droYak2.chr3R 10412228 87 + 28832112 UCUUCGGUGUUUCGGUGGCUUU-GUUUCCGAA-GCGAACAAACCGAAAACAAGGCCUCCUCUUUAAGGGGGUCGUGGAUAAUGCCGGUA ...(((((.(((((((.(((((-(....))))-))......))))))).((.((((((((.....)))))))).))......))))).. ( -32.30, z-score = -2.33, R) >droSec1.super_0 5560701 84 - 21120651 UCUUCGGUGUUUCGGUGGCUUU-GUUUUCCAA-ACGAACAAACCGAAAACAAGGCCUCUUC---AAGGGGGCCGUGGAUAAUGCCGGUA ...(((((.(((((((...(((-(((.....)-)))))...))))))).((.(((((((..---..))))))).))......))))).. ( -31.00, z-score = -2.47, R) >droSim1.chr3R 12528385 84 - 27517382 UCUUCGGUGUUUCGGUGGCUUU-GUUUUCCAA-ACGAACAAACCGAAAACAAGGCCUCUUC---AAGGGGGCCGUGGAUAAUGCCGGUA ...(((((.(((((((...(((-(((.....)-)))))...))))))).((.(((((((..---..))))))).))......))))).. ( -31.00, z-score = -2.47, R) >consensus UCUUCGGUGUUUCGGUGGCUUU_GUUUUCCAA_ACGAACAAACCGAAAACAAGGCCUCUUC___AAGGGGGCCGUGGAUAAUGCCGGUA ...(((((.(((((((.......((((........))))..))))))).((.((((((((.....)))))))).))......))))).. (-18.78 = -20.03 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:38 2011