| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,367,827 – 6,367,946 |
| Length | 119 |
| Max. P | 0.535199 |
| Location | 6,367,827 – 6,367,946 |
|---|---|
| Length | 119 |
| Sequences | 10 |
| Columns | 129 |
| Reading direction | forward |
| Mean pairwise identity | 93.75 |
| Shannon entropy | 0.12103 |
| G+C content | 0.39874 |
| Mean single sequence MFE | -20.01 |
| Consensus MFE | -18.91 |
| Energy contribution | -18.91 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.535199 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6367827 119 + 27905053 UCAGUUUUCUUUUGAAUGAUUCGAUGAUUUUAAGCGCCUGCGUUAUAUGAAAACCAAUCGCAUCAAAGCACCCCAUUAAAUUUCAUCGUCAGGCAUAUAUCCUUGCCG----CACACACACAC------ ((((.......)))).(((..((((((.((((((((....))))...............((......)).......))))..)))))))))((((........)))).----...........------ ( -19.60, z-score = -0.63, R) >droSim1.chr3R 12514083 119 - 27517382 UCAGUUUUCUUUUGAAUGAUUCGAUGAUUUUAAGCGCCUGCGUUAUAUGAAAACCAAUCGCAUCAAAGCACCCCAUUAAAUUUCAUCGUCAGGCAUAUAUCCUUGCCG----CACACACACAC------ ((((.......)))).(((..((((((.((((((((....))))...............((......)).......))))..)))))))))((((........)))).----...........------ ( -19.60, z-score = -0.63, R) >droSec1.super_0 5546557 119 - 21120651 UCAGUUUUCUUUUGAAUGAUUCGAUGAUUUUAAGCGCCUGCGUUAUAUGAAAACCAAUCGCAUCAAAGCACCCCAUUAAAUUUCAUCGUCAGGCAUAUAUCCUUGCCG----CACACACACAC------ ((((.......)))).(((..((((((.((((((((....))))...............((......)).......))))..)))))))))((((........)))).----...........------ ( -19.60, z-score = -0.63, R) >droYak2.chr3R 10396700 123 + 28832112 UCAGUUUUCUUUUGAAUGAUUCGAUGAUUUUAAGCGCCUGCGUUAUAUGAAAACCAAUCGCAUCAAAGCACCCCAUUAAAUUUCAUCGUCAGGCAUAUAUCCUUGCCG----CACACACACACACAC-- ((((.......)))).(((..((((((.((((((((....))))...............((......)).......))))..)))))))))((((........)))).----...............-- ( -19.60, z-score = -0.60, R) >droAna3.scaffold_13340 22963438 121 - 23697760 UCAGUUUUCUUUUGAAUGAUUCGAUGAUUUUAAGCGCCUGCGUUAUAUGAAAACCAAUCGCAUCAAAGCACCCCAUUAAAUUUCAUCGUCAGGCAUAUAUCCUUGCCC--CUUAUACUGGCGG------ (((((...........(((..((((((.((((((((....))))...............((......)).......))))..)))))))))((((........)))).--.....)))))...------ ( -21.20, z-score = -0.00, R) >dp4.chr2 23695667 129 - 30794189 UCAGUUUUCUUUUGAAUGAUUCGAUGAUUUUAAGCGCCUGCGUUAUAUGAAAACCAAUCGCAUCAAAGCACCCCAUUAAAUUUCAUCGUCAGGCAUAUAUCCUUGCCACACUCACACUCACACACACAC ............(((.((...((((((.((((((((....))))...............((......)).......))))..))))))...((((........)))).)).)))............... ( -20.00, z-score = -1.18, R) >droPer1.super_0 10870989 129 - 11822988 UCAGUUUUCUUUUGAAUGAUUCGAUGAUUUUAAGCGCCUGCGUUAUAUGAAAACCAAUCGCAUCAAAGCACCCCAUUAAAUUUCAUCGUCAGGCAUAUAUCCUUGCCACACUCACACUCACACACACAC ............(((.((...((((((.((((((((....))))...............((......)).......))))..))))))...((((........)))).)).)))............... ( -20.00, z-score = -1.18, R) >droWil1.scaffold_181108 158352 119 + 4707319 UCACUUUUCUUUUGAAUGAUUCGAUGAUUUUAAGCGCCUGCGUUAUAUGAAAACCAAUCGCAUCAAAGCACCCCAUUAAAUUUCAUCGUCAGGCAUAUAUCCUUGCCA----CACACAGACAC------ ..........((((..(((..((((((.((((((((....))))...............((......)).......))))..)))))))))((((........)))).----....))))...------ ( -20.20, z-score = -1.39, R) >droMoj3.scaffold_6540 5408747 119 + 34148556 UCACUUUUCUUUUGAAUGAUUCGAUGAUUUUAAGCGCCUGCGUUAUAUGAAAACCAAUCGCAUCAAAGCACCCCAUUAAAUUUCAUCGUCAGGCAUAUAUCCUUGCCA----CAAAUACACAC------ ..........((((..(((..((((((.((((((((....))))...............((......)).......))))..)))))))))((((........)))).----)))).......------ ( -20.20, z-score = -1.71, R) >droGri2.scaffold_14906 9261675 119 - 14172833 UCACUUUUCUUUUGAAUGAUUCGAUGAUUUUAAGCGCCUGCGUUAUAUGAAAACCAAUCGCAUCAAAGCACCCCAUUAAAUUUCAUCGUCAGGCAUAUAUCCUUGCCA----CAAACUCACAC------ ..........((((..(((..((((((.((((((((....))))...............((......)).......))))..)))))))))((((........)))).----)))).......------ ( -20.10, z-score = -1.68, R) >consensus UCAGUUUUCUUUUGAAUGAUUCGAUGAUUUUAAGCGCCUGCGUUAUAUGAAAACCAAUCGCAUCAAAGCACCCCAUUAAAUUUCAUCGUCAGGCAUAUAUCCUUGCCA____CACACACACAC______ ................(((..((((((.((((((((....))))...............((......)).......))))..)))))))))((((........))))...................... (-18.91 = -18.91 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:34 2011