| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,363,695 – 6,363,810 |
| Length | 115 |
| Max. P | 0.961465 |
| Location | 6,363,695 – 6,363,810 |
|---|---|
| Length | 115 |
| Sequences | 11 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.47 |
| Shannon entropy | 0.07205 |
| G+C content | 0.32151 |
| Mean single sequence MFE | -26.16 |
| Consensus MFE | -24.02 |
| Energy contribution | -23.82 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.69 |
| SVM RNA-class probability | 0.961465 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 6363695 115 - 27905053 -UUUUGUAAUAUUUUUAAUUUCGCCCAGGCAGCGACAUAAAUCA-UUUUGUCGCGCAUUGCAAAAAUUCCAAAAGAGCAAAGCGAAAAAAUUACAACAAUUUUUAAAUUAGCUCGCA--- -(((((((((............((....)).((((((.......-...))))))..))))))))).........((((.((....(((((((.....)))))))...)).))))...--- ( -25.10, z-score = -2.41, R) >droSim1.chr3R 12501498 115 + 27517382 -UUUUGUAAUAUUUUUAAUUUCGCCCAGGCAGCGACAUAAAUCA-UUUUGUCGCGCAUUGCAAAAAUUCCAAAAGAGCAAAGCGAAAAAAUUACAACAAUUUUUAAAUUAGCUCGCA--- -(((((((((............((....)).((((((.......-...))))))..))))))))).........((((.((....(((((((.....)))))))...)).))))...--- ( -25.10, z-score = -2.41, R) >droSec1.super_0 5542477 115 + 21120651 -UUUUGUAAUAUUUUUAAUUUCGCCCAGGCAGCGACAUAAAUCA-UUUUGUCGCGCAUUGCAAAAAUUCCAAAAGAGCAAAGCGAAAAAAUUACAACAAUUUUUAAAUUAGCUCGCA--- -(((((((((............((....)).((((((.......-...))))))..))))))))).........((((.((....(((((((.....)))))))...)).))))...--- ( -25.10, z-score = -2.41, R) >droYak2.chr3R 10392457 115 - 28832112 -UUUUGUAAUAUUUUUAAUUUCGCCCAGGCAGCGACAUAAAUCA-UUUUGUCGCGCAUUGCAAAAAUUCCAAAAGAGCAAAGCGAAAAAAUUACAACAAUUUUUAAAUUAGCUCGCA--- -(((((((((............((....)).((((((.......-...))))))..))))))))).........((((.((....(((((((.....)))))))...)).))))...--- ( -25.10, z-score = -2.41, R) >droEre2.scaffold_4770 2500678 115 + 17746568 -UUUUGUAAUAUUUUUAAUUUCGCCCAGGCAGCGACAUAAAUCA-UUUUGUCGCGCAUUGCAAAAAUUCCAAAAGAGCAAAGCGAAAAAAUUACAACAAUUUUUAAAUUAGCUCGCA--- -(((((((((............((....)).((((((.......-...))))))..))))))))).........((((.((....(((((((.....)))))))...)).))))...--- ( -25.10, z-score = -2.41, R) >droAna3.scaffold_13340 22959291 115 + 23697760 -UUUUGUAAUAUUUUUAAUUUCGCCCAGGCAGCGACAUAAAUCA-UUUUGUCGCGCAUUGCAAAAAUUCCAAAAGAGCAAAGCGAAAAAAUUACAAAAAUUUUUAAAUUAGCUCGCA--- -(((((((((.(((((......((....)).((((((.......-...))))))((.((((...............)))).))))))).)))))))))...................--- ( -25.36, z-score = -2.40, R) >dp4.chr2 23690940 115 + 30794189 -UUUUGUAAUAUUUUUAAUUUCGCCCAGGCAGCGACAUAAAUCA-UUUUGUCGCGCAUUGCAAAAAUUCCAAAAGAGCAAAGCGAAAAAAUUACAAAAAUUUUUAAAUUAGCUCGCA--- -(((((((((.(((((......((....)).((((((.......-...))))))((.((((...............)))).))))))).)))))))))...................--- ( -25.36, z-score = -2.40, R) >droPer1.super_0 10866196 116 + 11822988 UUUUUGUAAUAUUUUUAAUUUCGCCCAGGCAGCGACAUAAAUCAUUUUUGUCGCGCAUUGCAAAAAUUCCAAAAGAGCAAAGCGAAAAAAUUACAA-AAUUUUUAAAUUAGCUCGCA--- ((((((((((............((....)).((((((...........))))))..))))))))))........((((.((....(((((((....-)))))))...)).))))...--- ( -25.90, z-score = -2.46, R) >droVir3.scaffold_13047 1331600 118 - 19223366 -CUUUGUAAUAUUUUUAAUUUUGCGCAGGCAGCGACAUAAAUCA-UUUUGUCGCGCAUUGCAAAAAUUCCAAAAGAGCAAGGCGAAAAAAUUACAAAAAUUUUUAAAUUAGCUCGCAGCG -.((((((((.(((((..((((((((((((.((((((.......-...)))))))).))))......((.....))))))))..))))))))))))).............((.....)). ( -29.00, z-score = -1.99, R) >droMoj3.scaffold_6540 5403048 118 - 34148556 -CUUUGUAAUAUUUUUAAUUUUGCGCAGGCAGCGACAUAAAUCA-UUUUGUCGCGCAUUGCAAAAAUUCCAAAAGAGCAAGGCGAAAAAAUUACAAAAAUUUUUAAAUUAGCUCGCAGCA -.((((((((.(((((..((((((((((((.((((((.......-...)))))))).))))......((.....))))))))..))))))))))))).............((.....)). ( -29.00, z-score = -2.04, R) >droGri2.scaffold_14906 9254774 118 + 14172833 -CUUUGUAAUAUUUUUAAUUUUGCGCAGGCAGCGACAUAAAUCA-UUUUGUCGCGCAUUGCAAAAAUUCCAAAAGAGCAAGGCGAAAAAAUUACAAAAAUUUUUAAAUUAGCUCGCAACA -.((((((((.(((((..((((((((((((.((((((.......-...)))))))).))))......((.....))))))))..)))))))))))))....................... ( -27.60, z-score = -2.10, R) >consensus _UUUUGUAAUAUUUUUAAUUUCGCCCAGGCAGCGACAUAAAUCA_UUUUGUCGCGCAUUGCAAAAAUUCCAAAAGAGCAAAGCGAAAAAAUUACAAAAAUUUUUAAAUUAGCUCGCA___ ..((((((((............((....)).((((((...........))))))..))))))))..........((((.((....(((((((.....)))))))...)).))))...... (-24.02 = -23.82 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:33 2011