| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,356,836 – 6,356,940 |
| Length | 104 |
| Max. P | 0.528982 |
| Location | 6,356,836 – 6,356,940 |
|---|---|
| Length | 104 |
| Sequences | 12 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 91.33 |
| Shannon entropy | 0.17868 |
| G+C content | 0.35258 |
| Mean single sequence MFE | -19.81 |
| Consensus MFE | -18.28 |
| Energy contribution | -18.02 |
| Covariance contribution | -0.26 |
| Combinations/Pair | 1.09 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.528982 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6356836 104 + 27905053 ---GUCGUGUCUGAUCCCAUUUUAAUAUUCUAGAUACUUAAAUAAAAUACGUGUCUGGCCUGGCCAACAAACGUUUAUUGUUUGUUAAUUGAUUUCGCAGCCAAAGU-------- ---((.(((...((((.............((((((((.............)))))))).......((((((((.....))))))))....)))).))).))......-------- ( -19.02, z-score = -1.02, R) >droSim1.chr3R 12493658 104 - 27517382 ---GUCGUGUCUGAUCCCAUUUUAAUAUUCUAGAUACUUAAAUAAAAUACGUGUCUGGCCUGGCCAACAAACGUUUAUUGUUUGUUAAUUGAUUUCGCAGCCAAAGU-------- ---((.(((...((((.............((((((((.............)))))))).......((((((((.....))))))))....)))).))).))......-------- ( -19.02, z-score = -1.02, R) >droSec1.super_0 5535702 104 - 21120651 ---GUCGUGUCUGAUCCCAUUUUAAUAUUCUAGAUACUUAAAUAAAAUACGUGUCUGGCCUGGCCAACAAACGUUUAUUGUUUGUUAAUUGAUUUCGCAGCCAAAGU-------- ---((.(((...((((.............((((((((.............)))))))).......((((((((.....))))))))....)))).))).))......-------- ( -19.02, z-score = -1.02, R) >droYak2.chr3R 10385572 104 + 28832112 ---GUCGUGUCUGAUCCCAUUUUAAUAUUCUAGAUACUUAAAUAAAAUACGUGUCUGGCCUGGCCAACAAACGUUUAUUGUUUGUUAAUUGAUUUCGCAGCCAAAGU-------- ---((.(((...((((.............((((((((.............)))))))).......((((((((.....))))))))....)))).))).))......-------- ( -19.02, z-score = -1.02, R) >droEre2.scaffold_4770 2493914 112 - 17746568 ---GUCGUGUCUGAUCCCAUUUUAAUAUUCUAGAUACUUAAAUAAAAUACGUGUCUGGCCUGGCCAACAAACGUUUAUUGUUUGUUAAUUGAUUUCGCAGCCAAAGAGCCAAAGU ---...((((((((..............)).))))))..................(((((((((.((((((((.....))))))))...((......)))))..)).)))).... ( -21.24, z-score = -0.97, R) >droAna3.scaffold_13340 22953596 107 - 23697760 ---GUCGUGUCUGAUCCCAUUUUAAUAUUCUAGAUACUUAAAUAAAAUACGUGUCUGGCUCGGCCAGCAAACGUUUAUUGUUUGUUAAUUGAUUUCGCAGCCAAGUUCUC----- ---(((((((((((..............)).)))))).(((((((...((((..(((((...)))))...))))...)))))))......))).................----- ( -19.84, z-score = -1.03, R) >dp4.chr2 23684560 109 - 30794189 ---GUCGUGUCUGAUCCCAUUUUAAUAUUCUAGAUACUUAAAUAAAAUACGUGUCUGGCCUGGCCAACAAACGUUUAUUGUUUGUUAAUUGAUUUCGCAGCAAAGUUCUCUG--- ---((.(((...((((.............((((((((.............)))))))).......((((((((.....))))))))....)))).))).))...........--- ( -19.92, z-score = -1.26, R) >droPer1.super_0 10859774 109 - 11822988 ---GUCGUGUCUGAUCCCAUUUUAAUAUUCUAGAUACUUAAAUAAAAUACGUGUCUGGCCUGGCCAACAAACGUUUAUUGUUUGUUAAUUGAUUUCGCAGCAAAGUUCUCUG--- ---((.(((...((((.............((((((((.............)))))))).......((((((((.....))))))))....)))).))).))...........--- ( -19.92, z-score = -1.26, R) >droWil1.scaffold_181108 145610 105 + 4707319 ---GUCGUGUCUGAUCCCAUUUUAAUAUUCUAGAUACUUAAAUAAAAUACGUGUCUGGCUUGGCCAACAAACGUUUAUUGUUUGUUAAUUGAUUUCGCCUGGGAAGUU------- ---...........(((((..........((((((((.............))))))))...(((.((((((((.....))))))))....(....)))))))))....------- ( -23.82, z-score = -2.07, R) >droVir3.scaffold_13047 1325801 106 + 19223366 CAAGUCGUGUCUGAUCCCAUUUUAAUAUUCUAGAUACUUAAAUAAAAUACGUGUCUGGCUUGGCCAACAAACGUUUAUUGUUUGUUAAUUGAUUUUGCU--GGAAGUU------- ......((((((((..............)).))))))...........((...((..(((..(..((((((((.....))))))))..)..)....)).--.)).)).------- ( -18.74, z-score = -0.41, R) >droMoj3.scaffold_6540 5396537 106 + 34148556 CAGGUCGUGUCUGAUCCCAUUUUAAUAUUCUAGAUACUUAAAUAAAAUACGUGUCUGGCUUGGCCAACAAACGUUUAUUGUUUGUUAAUUGAUUUUGCU--GGAAGUU------- ..((((((((..((......))..)))).((((((((.............))))))))...))))((((((((.....)))))))).............--.......------- ( -19.42, z-score = -0.32, R) >droGri2.scaffold_14906 9248139 106 - 14172833 CAAGUCGUGUCUGAUCCCAUUUUAAUAUUCUAGAUACUUAAAUAAAAUACGUGUCUGGCUUGGCCAACAAACGUUUAUUGUUUGUUAAUUGAUUUUGCU--GGAAGUU------- ......((((((((..............)).))))))...........((...((..(((..(..((((((((.....))))))))..)..)....)).--.)).)).------- ( -18.74, z-score = -0.41, R) >consensus ___GUCGUGUCUGAUCCCAUUUUAAUAUUCUAGAUACUUAAAUAAAAUACGUGUCUGGCCUGGCCAACAAACGUUUAUUGUUUGUUAAUUGAUUUCGCAGCCAAAGU________ ......(((...((((.............((((((((.............)))))))).......((((((((.....))))))))....)))).)))................. (-18.28 = -18.02 + -0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:29 2011