| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,876,279 – 6,876,427 |
| Length | 148 |
| Max. P | 0.668261 |
| Location | 6,876,279 – 6,876,427 |
|---|---|
| Length | 148 |
| Sequences | 5 |
| Columns | 148 |
| Reading direction | reverse |
| Mean pairwise identity | 73.38 |
| Shannon entropy | 0.45997 |
| G+C content | 0.36602 |
| Mean single sequence MFE | -32.80 |
| Consensus MFE | -12.04 |
| Energy contribution | -14.16 |
| Covariance contribution | 2.12 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.668261 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6876279 148 - 23011544 UCAGGAUUUGAAGUUGUGUUUUUCUUUAAAUUCCAAAUAAAAUUGGAAGCCCAAAACAAUUCCUUUGACGGGCGGAUUAUAGUUUCCCGACUGCAAGAGAAAAUGAUAAUCCUGACUGGAAAAGAAAACACAUAUACGAAAGAUAUUU ......((((....((((((((.((((...((((((......))))))((((....(((.....)))..))))(((((((..((((.(........).))))...)))))))........))))))))))))....))))........ ( -34.30, z-score = -2.13, R) >droEre2.scaffold_4929 15795768 130 - 26641161 ---------------CUAGGGCUUGAAAAAAUU---GCUUAGCUGAAAUUCGAAAACAUUUCCUUUGGCAGGAGGAUUAUAAUUCGCGGACUGGAAGAGGAAACGAUAAUCCAGGCUGGGCGAGAAAACACAUUUACGAAAGAUAUUC ---------------................((---(((((((.......((((......((((((....))))))......))))....(((((...(....).....)))))))))))))).............(....)...... ( -29.80, z-score = -1.33, R) >droYak2.chr2L 16296520 122 + 22324452 ---------------CUAGGGCUUAAAACAAAU---G-------GAAACCC-AAAACAUUUCCUUUAGCAGGAGGAUUUUAGUUCGCCGACCGAAAGAGGAAACGAUAAUCCUGGCUGGACAAGAAAACACAUUUACGAAAGAUAUUC ---------------...(((.((....(....---)-------.)).)))-........((((((....))))))((((.(((((((...(....)((((........))))))).)))).))))..........(....)...... ( -22.50, z-score = -0.25, R) >droSec1.super_3 2416203 144 - 7220098 UCAGGGUUUGAAAUUGUGUGUUUUUUAAAAACU---GCUAAACUGGAAACCCAGAACAUUUCCUUUG-CGUGAGGAUUAUAGUUUCCCGACUGCAAGAGGAAAUAAUAAUCCUGACUGGAAAAGAAAACACAUUUACGAAAGAUAUUC .....((((......(((((((((((.......---......((((....))))....(((((....-.((.((((((((.(((((((........).)))))).)))))))).)).)))))))))))))))).......)))).... ( -39.42, z-score = -3.62, R) >droSim1.chr2L 6677882 146 - 22036055 UCAGUAUUUGAAAUUGUGUUUUUUUUUUAAAACU--GCUAAACUGGAAACCCAAAACAUUUCCUUUGACGUGAGGAUUAUAGUUUCCCGACUGCAAGAGGAAAUGAUAAUCCUGACUGGAAAAGAAAACACAUUUACGAAAGAUAUUC ......((((.((.((((((((((((((......--........(((((.........)))))......((.((((((((.(((((((........).)))))).)))))))).))..)))))))))))))).)).))))........ ( -38.00, z-score = -4.04, R) >consensus UCAG__UUUGAA_UUGUGUGUUUUUUAAAAAAU___GCUAAACUGGAAACCCAAAACAUUUCCUUUGACGGGAGGAUUAUAGUUUCCCGACUGCAAGAGGAAAUGAUAAUCCUGACUGGAAAAGAAAACACAUUUACGAAAGAUAUUC ........................................................((((((((((..(((..(((........)))...)))..))))))))))....(((.....)))................(....)...... (-12.04 = -14.16 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:22:28 2011