| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,346,634 – 6,346,773 |
| Length | 139 |
| Max. P | 0.554873 |
| Location | 6,346,634 – 6,346,773 |
|---|---|
| Length | 139 |
| Sequences | 5 |
| Columns | 157 |
| Reading direction | reverse |
| Mean pairwise identity | 63.25 |
| Shannon entropy | 0.64926 |
| G+C content | 0.57153 |
| Mean single sequence MFE | -43.08 |
| Consensus MFE | -25.12 |
| Energy contribution | -26.12 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.15 |
| Mean z-score | -0.28 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.554873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6346634 139 - 27905053 -------------CCCAAGUA-CCAGAGUG-CUAAAGUACCAAAGUACCGCAC--UACCAUCAUUUCCACCUCCGAC-UUCUGGCCAAUGGCUUUCCGGCACGUCAGAGAUGUUAUCGCGAUCUCGGUGGGAAUCCCUGACUGGCUGGGGGCUGGCC -------------.(((.((.-((((((((-(....((((....)))).))))--).((((((((((((((...(((-.....(((...((....)))))..))).(((((((....)).)))))))))))))....))).)))))))..))))).. ( -44.00, z-score = -0.05, R) >droPer1.super_0 10848321 105 + 11822988 ----------------------------------------------AUAGC----CGUAGCCAUAGCCCCCCCAGAU-UCC-GGCCAAUGGGGCGCACACACGUCAGAGAUGUUAUCGGGAUCUCCACGGGAAUCUCUGACUGGCUGGGGCCUAGGC ----------------------------------------------...((----(.((((((..(((((.((....-...-)).....)))))........(((((((((....(((((....)).)))..))))))))))))))).)))...... ( -45.60, z-score = -1.99, R) >droAna3.scaffold_13340 22943770 153 + 23697760 -CCGUUUACGCUUUCCACCUGAACCCGAGAACCCGAGAACCUGACAACCUGA---AACUUGCAAACCCAAAACUCAUACUCUGGCCAAUGGCUUUCCGGCACGUCAGAGAUGUUAUCGGGAUCUCAAUGGGGAUCUCUGACUGGCUGGGGGCUGGCC -........(((..((.(((...((.((((.(((((((.(((((.(((.(((---...(((......)))...)))..(((((((.....(((....)))..)))))))..))).))))).))))....))).)))).....))..)))))..))). ( -42.70, z-score = 0.22, R) >droEre2.scaffold_4770 2483799 118 + 17746568 ----------------------------------AAGUACC-CAGUACCGCAC--UACC-UCAUUUCCACCUCCGAU-UCCUGGCCAAUGGCUUCCCGGCACGCCAGAGAUCUUAUCGCGAUCUCAGUGGGAAUCCCUGACUGGCUGGGGGCUGGCC ----------------------------------..((((.-..)))).....--....-............(((.(-(((..((((..((.(((((((....)).((((((.......))))))...))))).)).....))))..)))).))).. ( -37.50, z-score = 0.07, R) >droYak2.chr3R 10375140 156 - 28832112 CCAAACAGUAGUGCUAAAGUGCCCCAAGUGCCCCAAGUACCAAAGUACCACAUAGUACCUUCAUUUCCACCUCCGAU-UCCUGGCCAAUGGCUUCCCGGCACGUCAGAGAUGUUAUCGCGAUCUCAGUGGGAAUCCCUGACUGGCUGGGGGCUGGCC ..........((((((..((((.....((((.....))))....))))....))))))...................-....(((((...(((.((((((..(((((.(((....((((.......))))..))).)))))..)))))))))))))) ( -45.60, z-score = 0.37, R) >consensus ________________A__U___C_______C__AAGUACC_AAGUACCGCA___UACCUUCAUUUCCACCUCCGAU_UCCUGGCCAAUGGCUUCCCGGCACGUCAGAGAUGUUAUCGCGAUCUCAGUGGGAAUCCCUGACUGGCUGGGGGCUGGCC ..................................................................................((((...(((.(((((((..(((((.(((....((((.......))))..))).)))))..)))))))))))))) (-25.12 = -26.12 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:25 2011