| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,338,418 – 6,338,524 |
| Length | 106 |
| Max. P | 0.557199 |
| Location | 6,338,418 – 6,338,524 |
|---|---|
| Length | 106 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.65 |
| Shannon entropy | 0.40570 |
| G+C content | 0.42672 |
| Mean single sequence MFE | -25.09 |
| Consensus MFE | -15.43 |
| Energy contribution | -15.30 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557199 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6338418 106 - 27905053 --UCUAUAUGGCAGAACGGAACUCAAUUCCA-UUUUGUCGUUUUGAUAAACGAUUUCAGGGCGUUGCAACAAUUUCCGCCC----------CAAAAUGA-GCAAAAAUCAGGGGCAGAUC --((...(((((((((.((((.....)))).-)))))))))...)).....(((((..(((.((((...)))).)))((((----------(....(((-.......))))))))))))) ( -28.50, z-score = -1.91, R) >droSim1.chr3R 12475343 106 + 27517382 --UCUAUAUGGCAGAACGGAACUCAAUUCCA-UUUUGUCGUUUUGAUAAACGAUUUCAGGGCGUUGCAACAAUUUCCGCCC----------CAAAAUGA-GCAAAAAUCAGGGGCAGAUC --((...(((((((((.((((.....)))).-)))))))))...)).....(((((..(((.((((...)))).)))((((----------(....(((-.......))))))))))))) ( -28.50, z-score = -1.91, R) >droSec1.super_0 5517471 106 + 21120651 --UCUAUAUGGCAGAACGGAACUCAAUUCCA-UUUUGUCGUUUUGAUAAACGAUUUCAGGGCGUUGCAACAAUUUCCGCCC----------CAAAAUGA-GCAAAAAUCAGGGGCAGAUC --((...(((((((((.((((.....)))).-)))))))))...)).....(((((..(((.((((...)))).)))((((----------(....(((-.......))))))))))))) ( -28.50, z-score = -1.91, R) >droYak2.chr3R 10366763 106 - 28832112 --UCUAUAUGGCAGAACGGAACUCAAUUCCA-UUUUGUCGUUUUGAUAAACGAUUUCAGGGCGUUGCAACAAUUUCCGCCC----------CAAAAUGA-GCAAAAAUCAGGGGCAGAUC --((...(((((((((.((((.....)))).-)))))))))...)).....(((((..(((.((((...)))).)))((((----------(....(((-.......))))))))))))) ( -28.50, z-score = -1.91, R) >droEre2.scaffold_4770 2475687 106 + 17746568 --UCUAUAUGGCAGAACGGAACUCAAUUCCA-UUUUGUCGUUUUGAUAAACGAUUUCAGGGCGUUGCAACAAUUUCCGCCC----------CAAAAUGA-GCAAAAAUCAGGGGCAGAUC --((...(((((((((.((((.....)))).-)))))))))...)).....(((((..(((.((((...)))).)))((((----------(....(((-.......))))))))))))) ( -28.50, z-score = -1.91, R) >droAna3.scaffold_13340 22936061 109 + 23697760 UCUGGGCAUGGUGGAACGGAACUCGAUUCCA-UUUUGUCGUUUUGAUAAACGAUUUCAGGGCGUUGCAACAAUUUCCGCCC----------CAAAAUGAGGCAGCAAUUGGGGCCACCGG .(((((((..((((((((.....)).)))))-)..)))((((((((.........))))))))..((..(((((.(.(((.----------(.....).))).).)))))..))..)))) ( -32.40, z-score = -0.15, R) >dp4.chr2 23665262 93 + 30794189 --------GAAGGCAACGGAACUCAAUUCCA-UUUUGUCGUUUUGAUAAACGAUUUCAGGGCGUUGCAACAAUUUCCGCCC----------UAAAAUGA-GCAGAGCUCGAAC------- --------...(....)((((.....)))).-....(((((((....)))))))(((((((((..(.......)..)))))----------).....((-((...))))))).------- ( -23.60, z-score = -1.43, R) >droPer1.super_0 10839755 93 + 11822988 --------GAAGGCAACGGAACUCAAUUCCA-UUUUGUCGUUUUGAUAAACGAUUUCAGGGCGUUGCAACAAUUUCCGCCC----------UAAAAUGA-GCAGAGCUCGAAC------- --------...(....)((((.....)))).-....(((((((....)))))))(((((((((..(.......)..)))))----------).....((-((...))))))).------- ( -23.60, z-score = -1.43, R) >droWil1.scaffold_181108 124997 102 - 4707319 -----------------GGAACUCAAUUCCAUUUUUGUCGUUUUGAUAAACGAUUUCAGGGCGUUGCAACAAUUUCCGCCCGUUAAAUGAGUAAAAUGACUCAAAAUCCGAAACCGAAG- -----------------((((.....))))...((((((.....))))))((.((((.(((((..(.......)..)))))......(((((......)))))......)))).))...- ( -22.80, z-score = -1.41, R) >droVir3.scaffold_13047 1304555 91 - 19223366 ------AAAAACGCAACGGAACUCAAUUCCA-UUUUGUCGUUUUGAUAAACGAUUUCAGGGCGUUGCAACAAUUUCCGCCU----------CAAAAUGA-GCA-AAGCCA---------- ------......((...((((.....)))).-.(((((((((((((.....(....)..((((..(.......)..)))))----------))))))))-.))-))))..---------- ( -18.80, z-score = -0.71, R) >droMoj3.scaffold_6540 5375054 86 - 34148556 ------AAAAACGCAACGGAACUCAAUUCCA-UUUUGUCGUUUUGAUAAACGAUUUCAGGGCGUUGCAACAAUUUCCGCCU----------CAAAAUGA-GCA-A--------------- ------......(((((((((.....)))).-.......(((((((.........))))))))))))..........((.(----------(.....))-)).-.--------------- ( -18.70, z-score = -1.08, R) >droGri2.scaffold_14906 9222194 91 + 14172833 ------AAAAACGCAACGGAACUCAAUUCCA-UUUUGUCGUUUUGAUAAACGAUUUCAGGGCGUUGCAACAAUUUCCGCCU----------CAAAAUGA-GCA-CAGCCA---------- ------......(((((((((.....)))).-.......(((((((.........))))))))))))..........((.(----------(.....))-)).-......---------- ( -18.70, z-score = -0.71, R) >consensus ______UAUGGCGGAACGGAACUCAAUUCCA_UUUUGUCGUUUUGAUAAACGAUUUCAGGGCGUUGCAACAAUUUCCGCCC__________CAAAAUGA_GCAAAAAUCAGGG_CA_A__ .................((((.....))))..(((((((((((((.............(((((..(.......)..)))))..........))))))))..))))).............. (-15.43 = -15.30 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:24 2011