| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,337,356 – 6,337,473 |
| Length | 117 |
| Max. P | 0.977592 |
| Location | 6,337,356 – 6,337,473 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 127 |
| Reading direction | reverse |
| Mean pairwise identity | 61.48 |
| Shannon entropy | 0.65540 |
| G+C content | 0.37556 |
| Mean single sequence MFE | -24.92 |
| Consensus MFE | -9.60 |
| Energy contribution | -10.36 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.977592 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6337356 117 - 27905053 UCGCUCUUAUUCAAAAUUAAAU-------CAAAAAAAAAAAAAAAUCUCCAUAACUAUGAAAUAGCGCUUAUCU---AGUUAAGAACUAAGUGCGGUGAGCCGUAAGGAUCGCCUCCCUUAAUUUUG ...........(((((((((..-------...................................((((((((((---.....)))..)))))))(((((.((....)).)))))....))))))))) ( -25.90, z-score = -4.10, R) >droPer1.super_0 10838803 108 + 11822988 ------UCGCUCUGAAUUACUU-----GAUUUUCGAUCGAAAAAUAACCGAUAACUAUGAAAUGGCGCUGAUUU---AAUUAAGAAUUAAGAGAGCUGAUCCA-----GUCAGCUCUCCUUCUUUCG ------......((((((((.(-----.(((((..((((.........))))......))))).).).))))))---).....(((..((((((((((((...-----))))))))).)))..))). ( -22.50, z-score = -1.07, R) >dp4.chr2 23664301 107 + 30794189 ------UCGCUCUGAAUUACUU-----GAUUUUCGAUCGAAAAAUAUCC-AUAACUAUGAAAUGGCGCUGAUUU---AAUUAAGAAUUAAGAGAGCUGAUCCA-----GUCAGCUCUCCUUCUUUCG ------.......(((....((-----((((((..((..((......((-((.........))))......)).---.))..))))))))((((((((((...-----)))))))))).....))). ( -23.60, z-score = -1.55, R) >droAna3.scaffold_13340 22935130 101 + 23697760 --------------------------UCGUUCUAGACCCGAAAAAUAUCCAUAACUAUGAAAUGGCGCUUAGUUCAAAGUUGAGAAUUAAGCGGGGAGAGCUGGGAGCAGCAACCCACUUGUUUUUG --------------------------..(((((...(((.........((((.........)))).(((((((((........)))))))))))).)))))((((........)))).......... ( -28.20, z-score = -1.80, R) >droYak2.chr3R 10365684 123 - 28832112 UCGCUCUUAUUCAAAAUGAAAUCCACAUCCAAAAAAAAAAAAAAAUCUCCAUAACUAUGAAAUAGCGCUGAUCU---AGUUAAGAACUAAGUGCGGUGAGCCGUGAGGAUCGCCUCGCUU-AUUUUG ...........((((((((.............................................(((((..(((---.....)))....)))))(((((.((....)).)))))....))-)))))) ( -24.40, z-score = -1.89, R) >consensus ______UCACUCAAAAUUAAAU_____GAUUAUAGAACAAAAAAAUAUCCAUAACUAUGAAAUGGCGCUGAUUU___AGUUAAGAAUUAAGAGAGGUGAGCCG__AG_AUCACCUCUCUUUAUUUUG ...................................................................................(((..(((((((((((..........)))))))))))...))). ( -9.60 = -10.36 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:23 2011