| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,332,073 – 6,332,166 |
| Length | 93 |
| Max. P | 0.762118 |
| Location | 6,332,073 – 6,332,166 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.15 |
| Shannon entropy | 0.25591 |
| G+C content | 0.42270 |
| Mean single sequence MFE | -26.78 |
| Consensus MFE | -19.22 |
| Energy contribution | -19.23 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.762118 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6332073 93 - 27905053 -----------UCCGUCGGCGGCUGUAAUUACUUUUACGAGCUGUUUACAGCUGCUGCGAGUGGUCAUUAUGUGGUGGCUUAUAAAAA----------------UUUCUGCUGUCAAUUU -----------..((.((((((((((((.(((((....))).)).)))))))))))))).............(((..((.........----------------.....))..))).... ( -27.14, z-score = -1.86, R) >droAna3.scaffold_13340 22930280 93 + 23697760 -----------UCUGUCGGCAGCUGUAAUUACUUUUACGAGCUGUUUACAGCUGCUCCGAGUGGUCAUUAUGCGGUGGCGUAUAAAAA----------------UUUCUGCUGUCAAUUU -----------..((.((((((..((.(((((((.....(((((....))))).....)))))))..(((((((....)))))))..)----------------)..)))))).)).... ( -26.60, z-score = -1.74, R) >droEre2.scaffold_4770 2469305 93 + 17746568 -----------UCCGUCGGCGGCUGUAAUUGCUUUUACGAGCUGUUUACAGCUGCUGCGAGUGGUCAUUAUGUGGUGGCUUAUAAAAA----------------UAUCUGCUGUCAAUUU -----------..((.((((((((((((..((((....))))...)))))))))))))).............(((..((..(((....----------------)))..))..))).... ( -32.30, z-score = -3.23, R) >droYak2.chr3R 10360212 93 - 28832112 -----------UCCGUCGGCGGCUGUAAUUACUUUUACGAGCUGUUUACAGCUGCUGCGAGUGGUCAUUAUGUGGUGGCUUAUAAAAA----------------UAUCUGCUGUCAAUUU -----------..((.((((((((((((.(((((....))).)).)))))))))))))).............(((..((..(((....----------------)))..))..))).... ( -28.20, z-score = -2.16, R) >droSec1.super_0 5511189 93 + 21120651 -----------UCCGUCGGCGGCUGUAAUUACUUUUACGAGCUGUUUACAGCUGCUGCGAGUGGUCAUUAUGUGGUGGCUUAUAAAAA----------------UUUCUGCUGUCAAUUU -----------..((.((((((((((((.(((((....))).)).)))))))))))))).............(((..((.........----------------.....))..))).... ( -27.14, z-score = -1.86, R) >droSim1.chr3R 12469054 93 + 27517382 -----------UCCGUCGGCGGCUGUAAUUACUUUUACGAGCUGUUUACAGCUGCUGCGAGUGGUCAUUAUGUGGUGGCUUAUAAAAA----------------UUUCUGCUGUCAAUUU -----------..((.((((((((((((.(((((....))).)).)))))))))))))).............(((..((.........----------------.....))..))).... ( -27.14, z-score = -1.86, R) >droPer1.super_0 10833761 93 + 11822988 -----------UCUGUCGGCAACUGUAAUUACUUUUACGAGCUGUUUACAGCUGCUCCGAGUGGUCAUUAUGUGGUGGCAUAUAAAAA----------------UUUCUGCUGUCAAUUU -----------..((.(((((......(((((((.....(((((....))))).....)))))))..(((((((....)))))))...----------------....))))).)).... ( -22.70, z-score = -1.26, R) >dp4.chr2 23659247 93 + 30794189 -----------UCUGUCGGCAACUGUAAUUACUUUUACGAGCUGUUUACAGCUGCUCCGAGUGGUCAUUAUGUGGUGGCAUAUAAAAA----------------UUUCUGCUGUCAAUUU -----------..((.(((((......(((((((.....(((((....))))).....)))))))..(((((((....)))))))...----------------....))))).)).... ( -22.70, z-score = -1.26, R) >droWil1.scaffold_181108 118327 109 - 4707319 -----------ACUGUCGGCAGCUGUAAUUACUUUUACGAGCUGUUUACAGCUGCUCCGAGUGGUCAUUAUGUGGCAAACAAAAAAAAUAAUAUACAAGAAAAUUUUUUGCUGUCAAUUU -----------.((((..((((((((((......)))).))))))..))))(..(.....)..)........(((((..(((((((.................))))))).))))).... ( -23.93, z-score = -0.90, R) >droVir3.scaffold_13047 1298106 91 - 19223366 -----------UCCGCC-ACAGCUGUAAUUACUUUUACGAGCUGUUUACAGCUGCUCCAAGUGGCCAUUAUGCGGUGGCUAA-CAAAA----------------UUUCCGCUGUCAAUUU -----------...(((-((((((((((......)))))(((((....))))))))....)))))......(((((((....-.....----------------...)))))))...... ( -25.40, z-score = -1.88, R) >droMoj3.scaffold_6540 5368607 91 - 34148556 -----------UCCACG-GCAGCUGUAAUUACUUUUACGAGCUGUUUACAGCUGCUCCAAGCAGCCAUUAUGCGGUGGCUAA-CAAAA----------------UUUUCGCUGUCAAUUU -----------.....(-((((((((((......)))))(((((....)))))((.....))((((((......))))))..-.....----------------.....))))))..... ( -27.40, z-score = -2.42, R) >droGri2.scaffold_14906 9215449 103 + 14172833 ACGUUUGUCCAUCCGUC-GCAGCUGUAAUUACUUUUACGAGCUGUUUACAGCUGCUCCAAGUGGCCAUUAUGCGGUGGCAAACCAAAA----------------UGUCUACUGUCAAUUU ..(((((.(((.((((.-((((((((((.(((((....))).)).)))))))))).((....)).......)))))))))))).....----------------................ ( -30.70, z-score = -2.73, R) >consensus ___________UCCGUCGGCAGCUGUAAUUACUUUUACGAGCUGUUUACAGCUGCUCCGAGUGGUCAUUAUGUGGUGGCUUAUAAAAA________________UUUCUGCUGUCAAUUU ..............((..((((((((((......)))).))))))..)).(((((..(((((....))).))..)))))......................................... (-19.22 = -19.23 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:19 2011