| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,310,801 – 6,310,900 |
| Length | 99 |
| Max. P | 0.667488 |
| Location | 6,310,801 – 6,310,900 |
|---|---|
| Length | 99 |
| Sequences | 12 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 85.19 |
| Shannon entropy | 0.30109 |
| G+C content | 0.37838 |
| Mean single sequence MFE | -25.65 |
| Consensus MFE | -15.07 |
| Energy contribution | -15.34 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.667488 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6310801 99 + 27905053 -------------ACUUGACGACGGCAGCGC---AGACUGCGCCAAAAGUCAAAUUUUGUAGAUUGCAAUAAAUCAAAUAGCAAUUACACGAAAUUAGGCAUGUUUUCUCAAUUU -------------..((((.((..(((((((---.....)))).....(((.((((((((.((((((.............))))))..)))))))).))).)))..))))))... ( -25.92, z-score = -2.75, R) >droSim1.chr3R 12440081 99 - 27517382 -------------ACUUGACGACGGCAGCGC---AGACUGCGCCAAAAGUCAAAUUUUGUAGAUUGCAAUAAAUCAAAUAGCAAUUACACGAAAUUAGGCAUGUUUUCUCAAUUU -------------..((((.((..(((((((---.....)))).....(((.((((((((.((((((.............))))))..)))))))).))).)))..))))))... ( -25.92, z-score = -2.75, R) >droSec1.super_0 5489970 99 - 21120651 -------------ACUUGACGACGGCAGCGC---AGACUGCGCCAAAAGUCAAAUUUUGUAGAUUGCAAUAAAUCAAAUAGCAAUUACACGAAAUUAGGCAUGUUUUCUCAAUUU -------------..((((.((..(((((((---.....)))).....(((.((((((((.((((((.............))))))..)))))))).))).)))..))))))... ( -25.92, z-score = -2.75, R) >droYak2.chr3R 10337772 99 + 28832112 -------------ACUUGACGACGGCAGCGC---AGACUGCGCCAAAAGUCAAAUUUUCUAGAUUGCAAUAAAUCAAAUAGCAAUUACACGAAAUUAGGCAUGUUUUCUCAAUUU -------------..((((.((..(((((((---.....)))).....(((.((((((...((((((.............))))))....)))))).))).)))..))))))... ( -21.92, z-score = -1.76, R) >droEre2.scaffold_4770 2444556 99 - 17746568 -------------ACUUGACGACGGCGGCGC---AGACUGCGCCAAAAGUCAAAUUUUGUAGAUUGCAAUAAAUCAAAUAGCAAUUACACGAAAUUAGGCAUGUUUUCUCAAUUU -------------..((((.((..(((((((---.....)))))....(((.((((((((.((((((.............))))))..)))))))).)))..))..))))))... ( -29.22, z-score = -3.59, R) >droAna3.scaffold_13340 22909713 104 - 23697760 ----------GGCAGUUGAUGGAGGCAGCGCC-CAGACUGCGCCAAAAGUCAAAUUUUCCAGAUUGCAAUAAAUCAAAUGGCAAUUACACGAAAUUAGGCAUGUUUUCUCAAUUU ----------...((((((.(((((((..(((-..((((........)))).((((((...((((((.............))))))....)))))).))).))))))))))))). ( -25.12, z-score = -0.86, R) >dp4.chr2 23638150 115 - 30794189 AGUUGACGACUCUCUGGGACUUUGUCGGCGGCACAGACUGCGCCAAAAGUCAAAUUUUGUAGAUUGCAAUAAAUCAAAUAGCAAUUACACGAAAUUAGGCAUGUUUUCUCAAUUU .((((((((.((.....))..))))))))(((.(.....).)))....(((.((((((((.((((((.............))))))..)))))))).)))............... ( -27.12, z-score = -1.26, R) >droPer1.super_0 10811572 115 - 11822988 AGUUGACGACUCUCUGGGACUUUGUCGGCGGCACAGACUGCGCCAAAAGUCAAAUUUUGUAGAUUGCUAUAAAUCAAAUAGCAAUUACACGAAAUUAGGCAUGUUUUCUCAAUUU .((((((((.((.....))..))))))))(((.(.....).)))....(((.((((((((.(((((((((.......)))))))))..)))))))).)))............... ( -31.50, z-score = -2.67, R) >droWil1.scaffold_181108 91355 91 + 4707319 -------------------UCUUGUUGGCU-----GGCAGCGCCAAAAGUCAAAUUUUGUAGAUUGCAAUAAAUCAAAUAGCAAUUACACGAAAUUAGGCAUGUUUUCUCAAUUU -------------------.....(((((.-----......)))))..(((.((((((((.((((((.............))))))..)))))))).)))............... ( -19.02, z-score = -1.06, R) >droVir3.scaffold_13047 1276572 104 + 19223366 -----------ACUGGGGACUUUGUCGGCGUCGCAGACUGCGCCAAAAGUCAAAUUUUGUAGAUUGUAAUAAAUCAAAUAGCAAUUACACGAAAUUAGGCAUGUUUUCUCAAUUU -----------...(..(((..(((((((((........)))))........((((((((.((((((.((.......)).))))))..)))))))).)))).)))..)....... ( -25.00, z-score = -1.77, R) >droMoj3.scaffold_6540 5342627 104 + 34148556 -----------ACUGGGGACUUUGUCGGCGUCGCAGACUGCGCCAAAAGUCAAAUUUUGUAGAUUGUAAUAAAUCAAAUAGCAAUUACACGAAAUUAGGCAUGUUUUCUCAAUUU -----------...(..(((..(((((((((........)))))........((((((((.((((((.((.......)).))))))..)))))))).)))).)))..)....... ( -25.00, z-score = -1.77, R) >droGri2.scaffold_14906 9190417 104 - 14172833 -----------ACUGGGGACUUUGUCGGCGUCGCAGACUGCGCCAAAAGUCAAAUUUUGUAGAUUGUAAUAAAUCAAAUAGCAAUUACACGAAAUUAGGCUUGUUUUCUCAAUUU -----------...(..(((......(((((........)))))..(((((.((((((((.((((((.((.......)).))))))..)))))))).))))))))..)....... ( -26.10, z-score = -2.05, R) >consensus _____________ACUUGACGUUGGCGGCGC___AGACUGCGCCAAAAGUCAAAUUUUGUAGAUUGCAAUAAAUCAAAUAGCAAUUACACGAAAUUAGGCAUGUUUUCUCAAUUU ...........................((((........)))).....(((.((((((((.((((((.............))))))..)))))))).)))............... (-15.07 = -15.34 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:09 2011