| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,306,839 – 6,306,956 |
| Length | 117 |
| Max. P | 0.865547 |
| Location | 6,306,839 – 6,306,956 |
|---|---|
| Length | 117 |
| Sequences | 8 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 88.81 |
| Shannon entropy | 0.20610 |
| G+C content | 0.39665 |
| Mean single sequence MFE | -24.60 |
| Consensus MFE | -23.18 |
| Energy contribution | -21.82 |
| Covariance contribution | -1.36 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.865547 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6306839 117 - 27905053 CUGACCGGCUGACCGGCUGAAUGGCUCUUUCGGACGGAUGUUAACUUCCACUUAAAUGGCUGCGCUUCCGCUUGUCGUUUAUUUGGCUUUUUAAUAUAAUGUACAUAAUUUUUCAAU .((((((.((((..((((....))))...)))).)))(((((((...(((..((((((((.(((....)))..))))))))..)))....)))))))...............))).. ( -29.70, z-score = -2.23, R) >droEre2.scaffold_4770 2440799 109 + 17746568 --------CUGACCGGCUGAAUGGCUCUUUCGGACGGAUGUUAACUUCCACUUAAAUGGCUGCGCUUCCGCCUGUCGUUUAUUUGGCUUUUUAAUAUAAUGUACAUAAUUUUUCAAU --------.((((((.(((((.......))))).)))(((((((...(((..((((((((.(((....)))..))))))))..)))....)))))))...............))).. ( -26.70, z-score = -2.25, R) >droYak2.chr3R 10333753 109 - 28832112 --------CUGACCGGCUGAAUGGCUCUUUCGGACGGAUGUUAACUUCCACUUAAAUGGCUGCGCUUCCGCUUGUCGUUUGUUUGGCUUUUUAAUAUAAUGUACAUAAUUUUUCAAU --------.((((((.(((((.......))))).)))(((((((...(((..((((((((.(((....)))..))))))))..)))....)))))))...............))).. ( -26.50, z-score = -2.05, R) >droSec1.super_0 5486076 110 + 21120651 -------ACUGACCGGCUGAAUAGCUCUUUCGGACGGAUGUUAACUUCCACUUAAAUGGCUGCGCUUCCGCUUCUCGUUUAUUUGGCUUUUUAAUAUAAUGUACAUAAUUUUUCAAU -------..((((((.(((((.......))))).)))(((((((...(((..(((((((..(((....)))...)))))))..)))....)))))))...............))).. ( -23.20, z-score = -1.78, R) >droSim1.chr3R 12436203 110 + 27517382 -------ACUGACCGGCUGAAUGGCUCUUUCGGACGGAUGUUAACUUCCACUUAAAUGGCUGCGCUUCCGCUUGUCGUUUAUUUGGCUUUUUAAUAUAAUGUACAUAAUUUUUCAAU -------..((((((.(((((.......))))).)))(((((((...(((..((((((((.(((....)))..))))))))..)))....)))))))...............))).. ( -26.80, z-score = -2.48, R) >droMoj3.scaffold_6540 5336342 109 - 34148556 --------UUUGCUGACCGGCGGCCAUUGUCGGACGGAUGUUAACUUCCACUUAAAUGGCUUCGUUUCCGCUUGUCGUUUAUUUGCCUUUUUAAUAUAAUGCACAUAAUUUUUCAAU --------..(((...(((.((((....))))..)))(((((((....((..((((((((..((....))...))))))))..)).....)))))))...))).............. ( -20.80, z-score = -0.05, R) >droGri2.scaffold_14906 9185310 109 + 14172833 --------UGCGCUGACCGGCGGCCAUUGUCGGACGGAUGUUAACUUCCACUUAAAUGGUUUCGUUUCCGCUUGUCGUUUAUUUGGCUUUUUAAUAUAAUGUACAUAAUUUUUCAAU --------(((((((.((((((.....)))))).)))(((((((...(((..(((((((...((....))....)))))))..)))....)))))))..)))).............. ( -19.70, z-score = 0.92, R) >droVir3.scaffold_13047 1272469 109 - 19223366 --------UUUGCUGACCGGCGGCCAUUGUCGGACGGAUGUUAACUUCCACUUAAAUGGCUUCGUUUCCGCUUGUCGUUUAUUUGGCUUUUUAAUAUAAUGUACAUAAUUUUUCAAU --------....(((.((((((.....)))))).)))(((((((...(((..((((((((..((....))...))))))))..)))....))))))).................... ( -23.40, z-score = -0.80, R) >consensus ________CUGACCGGCUGAAUGGCUCUUUCGGACGGAUGUUAACUUCCACUUAAAUGGCUGCGCUUCCGCUUGUCGUUUAUUUGGCUUUUUAAUAUAAUGUACAUAAUUUUUCAAU ............(((.(((((.......))))).)))(((((((...(((..((((((((...((....))..))))))))..)))....))))))).................... (-23.18 = -21.82 + -1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:08 2011