| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,305,318 – 6,305,414 |
| Length | 96 |
| Max. P | 0.851538 |
| Location | 6,305,318 – 6,305,414 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 70.11 |
| Shannon entropy | 0.38555 |
| G+C content | 0.63781 |
| Mean single sequence MFE | -28.45 |
| Consensus MFE | -16.74 |
| Energy contribution | -17.97 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.851538 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6305318 96 + 27905053 UACUUCCUCGGGAGCCCCCUCCUUUCAA-GGGGGUUUCCCCCUGGAGCCACCGCCCCUGGACCCCAUGGCUAACCCCCCCCUCUGGUUCCCUACUCG .........(((((((((((.......)-))))))))))....(((((((..(((..(((...))).))).............)))))))....... ( -31.66, z-score = -0.78, R) >droSec1.super_0 5484627 77 - 21120651 UACUUCCUCGGGAGCCCCCUCCUCUCAAAGGGGGUUUCCCCCUUGAGGCACCGCCACCGCCUCUGGUUCCCUACACA-------------------- .........(((((((...........(((((((...)))))))(((((.........))))).)))))))......-------------------- ( -31.60, z-score = -3.31, R) >droSim1.chr3R 12434721 77 - 27517382 UACUUCCUCGGGAGUCCCCUCCUCUCAAAGAGGGUUUCCCCCUUGAGCCACCGCCACCGCCUCUGGUUCCCUACUCA-------------------- .........(((((..(((((........))))).)))))....((((((..((....))...))))))........-------------------- ( -22.10, z-score = -1.71, R) >consensus UACUUCCUCGGGAGCCCCCUCCUCUCAAAGGGGGUUUCCCCCUUGAGCCACCGCCACCGCCUCUGGUUCCCUACACA____________________ .........(((((((((((........))))))))))).....(((((.........))))).................................. (-16.74 = -17.97 + 1.23)
| Location | 6,305,318 – 6,305,414 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 70.11 |
| Shannon entropy | 0.38555 |
| G+C content | 0.63781 |
| Mean single sequence MFE | -34.00 |
| Consensus MFE | -24.05 |
| Energy contribution | -24.50 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.553776 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6305318 96 - 27905053 CGAGUAGGGAACCAGAGGGGGGGGUUAGCCAUGGGGUCCAGGGGCGGUGGCUCCAGGGGGAAACCCCC-UUGAAAGGAGGGGGCUCCCGAGGAAGUA ......(((..(((....((........)).)))..))).(((((....))))).(((((...(((((-((.....))))))))))))......... ( -38.90, z-score = -0.15, R) >droSec1.super_0 5484627 77 + 21120651 --------------------UGUGUAGGGAACCAGAGGCGGUGGCGGUGCCUCAAGGGGGAAACCCCCUUUGAGAGGAGGGGGCUCCCGAGGAAGUA --------------------...........((.((((((.......))))))..(((((...((((((((....)))))))))))))..))..... ( -34.80, z-score = -2.06, R) >droSim1.chr3R 12434721 77 + 27517382 --------------------UGAGUAGGGAACCAGAGGCGGUGGCGGUGGCUCAAGGGGGAAACCCUCUUUGAGAGGAGGGGACUCCCGAGGAAGUA --------------------(((((.....(((......))).......)))))..(((....)))((((((...((((....)))))))))).... ( -28.30, z-score = -1.15, R) >consensus ____________________UGAGUAGGGAACCAGAGGCGGUGGCGGUGGCUCAAGGGGGAAACCCCCUUUGAGAGGAGGGGGCUCCCGAGGAAGUA ..................................((((((.......))))))..(((((...((((((((....)))))))))))))......... (-24.05 = -24.50 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:07 2011