| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,300,075 – 6,300,170 |
| Length | 95 |
| Max. P | 0.500000 |
| Location | 6,300,075 – 6,300,170 |
|---|---|
| Length | 95 |
| Sequences | 8 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 79.76 |
| Shannon entropy | 0.37406 |
| G+C content | 0.43511 |
| Mean single sequence MFE | -23.38 |
| Consensus MFE | -15.15 |
| Energy contribution | -15.04 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 6300075 95 + 27905053 -------CACUACUUGCGAUUCGUGAAGUAAUUACUAUAAUUACCUUCAAGGUAGAUUUUCCAAAACGAUGCGAGGGCAGCAGGGAACUCAGCUCAACUCGG------ -------.....((((((..((((((((((((((...)))))).))))..((........))...))))))))))(((.(.((....))).)))........------ ( -19.80, z-score = -0.48, R) >droSim1.chr3R 12429506 95 - 27517382 -------CACUACUUGCGAUUCGUGAAGUAAUUACUAUAAUUACCUUCAAGGUAGAUUUUCCAAAACGAUGCGAGGGCAGCAGGGAACUCAGCUCAACUCGG------ -------.....((((((..((((((((((((((...)))))).))))..((........))...))))))))))(((.(.((....))).)))........------ ( -19.80, z-score = -0.48, R) >droSec1.super_0 5479498 88 - 21120651 -------CACUACUUGCGAUUCGUGAAGUAAUUACUAUAAUUACCUUCAAGGUAGAUUUUCCAAAACGAUGCGAGGGCAGCAGGGAACUCAGCUC------------- -------.....((((((..((((((((((((((...)))))).))))..((........))...))))))))))(((.(.((....))).))).------------- ( -19.80, z-score = -1.07, R) >droEre2.scaffold_4770 2434146 95 - 17746568 -------CACUACUUGCGAUUCGUGAAGUAAUUACUAUAAUUACCUUCAAGGUAGAUUUUCCAAAACGAUGCGAGGGCAGCAGGGAACUCGGCUCAGCGCGG------ -------..(((((((((...)))((((((((((...)))))).)))).))))))...........((.(((..((((.(.((....))).)))).))))).------ ( -22.50, z-score = -0.49, R) >droWil1.scaffold_181108 77984 95 + 4707319 ----GUUCACUACUUGCGAUUCGUGAAGUAAUUACUAUAAUUACCUUCAAGGUAGAUUUUCCAAAACGAUGCCAGUGCA--AA-GACCCAAAGUCUGUGCGA------ ----.......(((.(((..((((((((((((((...)))))).))))..((........))...))))))).)))(((--.(-(((.....)))).)))..------ ( -21.00, z-score = -1.70, R) >droVir3.scaffold_13047 1265439 92 + 19223366 CAGCGUUCACUACUUGCGAUUCGUGAAGUAAUUACUAUAAUUACCUUCAAGGUAGAUUUUCCAAAAUGAUGCGAGUGCG--AGUGGCGGGCAGU-------------- ....((((.((((((((.((((((((((((((((...)))))).))))..((........))........)))))))))--))))).))))...-------------- ( -29.70, z-score = -2.99, R) >droMoj3.scaffold_6540 5318047 88 + 34148556 CAGCGUUCACUACUUGCGAUUCGUGAAGUAAUUACUAUAAUUACCUUCAAGGUAGAUUUUCCAAAAUGAUGCGAGUGCG--AGUGGCGGC------------------ ......((.((((((((.((((((((((((((((...)))))).))))..((........))........)))))))))--))))).)).------------------ ( -24.90, z-score = -1.97, R) >droGri2.scaffold_14906 9177152 106 - 14172833 CAGCGUUCACUACUUGCGAUUCGUGAAGUAAUUACUAUAAUUACCUUCAAGGUAGAUUUUCCAAAAUGAUGCGAGUGCG--AGUGGCGGGUUGUGAGUUGCGAAUUGU ((((..((((.((((((.((((((((((((((((...)))))).))))..((........))..............)))--))).)))))).))))))))........ ( -29.50, z-score = -1.47, R) >consensus _______CACUACUUGCGAUUCGUGAAGUAAUUACUAUAAUUACCUUCAAGGUAGAUUUUCCAAAACGAUGCGAGGGCA__AGGGAACUCAGCUCA___CGG______ ............((((((..((((((((((((((...)))))).))))..((........))...))))))))))................................. (-15.15 = -15.04 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:05 2011