| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,296,554 – 6,296,671 |
| Length | 117 |
| Max. P | 0.500000 |
| Location | 6,296,554 – 6,296,671 |
|---|---|
| Length | 117 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 96.49 |
| Shannon entropy | 0.07377 |
| G+C content | 0.37527 |
| Mean single sequence MFE | -21.43 |
| Consensus MFE | -20.38 |
| Energy contribution | -20.22 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 6296554 117 - 27905053 -AAAGGCAA-CCAACAAAAUUCAGUAGAGCAAUUUCUAUGAAAUUUAUUUCACAUGAAGAUUUAUCGCGAUUCCAGACAGUUCUGGCGACACCUGCCAACGCCUACAAAUGUAAUUUAU -..((((..-..(((.(((((..((((((....))))))..))))).((((....))))....................))).(((((.....)))))..))))............... ( -18.60, z-score = -0.45, R) >droSim1.chr3R 12425800 117 + 27517382 -AAAGGCAA-CCAACAAAAUUCAGUGGAGCAAUUUCUAUGAAAUUUAUUUCACAUGAAGAUUUAUCGCGAUUCCAGACAGUUCUGGCGACACCUGCCAACGCCUACAAAUGUAAUUUAU -..((((..-.........((((((((((.((((((...))))))..)))))).))))......((((.....((((....))))))))...........))))............... ( -20.90, z-score = -0.59, R) >droSec1.super_0 5475966 117 + 21120651 -AAAGGCAA-CCAACAAAAUUCAGUGGAGCAAUUUCUAUGAAAUUUAUUUCACAUGAAGAUUUAUCGCGAUUCCAGACAGUUCUGGCGACACCUGCCAACGCCUACAAAUGUAAUUUAU -..((((..-.........((((((((((.((((((...))))))..)))))).))))......((((.....((((....))))))))...........))))............... ( -20.90, z-score = -0.59, R) >droYak2.chr3R_random 1255523 117 - 3277457 -AAAGGCAA-CCAACAAAAUUCAGUGGAGCAAUUUCUAUGAAAUUUAUUUCACAUGAAGAUUUAUCGCGAUUCCAGACAGUUCUGGCGACACCUGCCAACGCCUACAAAUGUAAUUUAU -..((((..-.........((((((((((.((((((...))))))..)))))).))))......((((.....((((....))))))))...........))))............... ( -20.90, z-score = -0.59, R) >droEre2.scaffold_4770 2430664 117 + 17746568 -AAAGGCAG-CCAACAAAAUUCAGUGGAGCAAUUUCUAUGAAAUUUAUUUCACAUGAAGAUUUAUCGCGAUUCCAGACAGUUCUGGCGACACCUGCCAACGCCUACAAAUGUAAUUUAU -...(((((-.........((((((((((.((((((...))))))..)))))).))))......((((.....((((....))))))))...)))))......(((....)))...... ( -23.20, z-score = -0.98, R) >droAna3.scaffold_13340 22896234 118 + 23697760 -AAAGGCAGACCAACAAAAUUCAGUGGAGCAAUUUCUAUGAAAUUUAUUUCACAUGAAGAUUUAUCGCGAUUCCAGACAGUUCUGGCGACACCUGCCAACGCCUACAAAUGUAAUUUAU -...(((((..........((((((((((.((((((...))))))..)))))).))))......((((.....((((....))))))))...)))))......(((....)))...... ( -23.90, z-score = -1.38, R) >dp4.chr2 23624648 117 + 30794189 -AGAGGCAA-CCAACAAAAUUCAGUGAAGCAAUUUCUAUGAAAUUUAUUUCACAUGAAGAUUUAUCGCGAUUCCAGACAGCCCUGGCGACACCUGCCAACGCCUACAAAUGUAAUUUAU -..((((..-.........((((((((((.((((((...))))))..)))))).)))).........................(((((.....)))))..))))............... ( -21.30, z-score = -1.13, R) >droPer1.super_0 10797987 117 + 11822988 -AGAGGCAA-CCAACAAAAUUCAGUGAAGCAAUUUCUAUGAAAUUUAUUUCACAUGAAGAUUUAUCGCGAUUCCAGACAGCCCUGGCGACACCUGCCAACGCCUACAAAUGUAAUUUAU -..((((..-.........((((((((((.((((((...))))))..)))))).)))).........................(((((.....)))))..))))............... ( -21.30, z-score = -1.13, R) >droWil1.scaffold_181108 75018 119 - 4707319 AAAGAGCAACCCAACAAAAUUCAGUGAAGCAAUUUCUAUGAAAUUUAUUUCACAUGAAGAUUUAUCGCGAUUUCAGACAGCUCUGGCGACACCUGCCAACGCCUACAAAUGUAAUUUAU ..(((((............((((((((((.((((((...))))))..)))))).))))((....)).............)))))((((...........))))(((....)))...... ( -20.70, z-score = -1.10, R) >droVir3.scaffold_13047 1261740 117 - 19223366 -AAAGGCAA-CAAACAAAAUUCAGUGAAGCAAUUUCUAUGAAAUUUAUUUCACAUGAAGAUUUAUCGCGAUUCCAGACAGCACUGGCGACACCUGCCAACGCCUACAAAUGUAAUUUAU -..((((..-.........((((((((((.((((((...))))))..)))))).))))........((...........))..(((((.....)))))..))))............... ( -21.80, z-score = -1.52, R) >droMoj3.scaffold_6540 5313317 117 - 34148556 -AAAGGCAA-CAAACAAAAUUCAGUGAAGCAAUUUCUAUGAAAUUUAUUUCACAUGAAGAUUUAUCGCGAUUUCAGACAGCACUGGCGACACCUGCCAACGCCUACAAAUGUAAUUUAU -..((((..-.........((((((((((.((((((...))))))..)))))).))))........((...........))..(((((.....)))))..))))............... ( -21.80, z-score = -1.43, R) >droGri2.scaffold_14906 9173674 117 + 14172833 -AAAGGCAA-CAAACAAAAUUCAGUGAAGCAAUUUCUAUGAAAUUUAUUUCACAUGAAGAUUUAUCGCGAUUUCAGACAGCACUGGCGACACCUGCCAACGCCUACAAAUGUAAUUUAU -..((((..-.........((((((((((.((((((...))))))..)))))).))))........((...........))..(((((.....)))))..))))............... ( -21.80, z-score = -1.43, R) >consensus _AAAGGCAA_CCAACAAAAUUCAGUGAAGCAAUUUCUAUGAAAUUUAUUUCACAUGAAGAUUUAUCGCGAUUCCAGACAGCUCUGGCGACACCUGCCAACGCCUACAAAUGUAAUUUAU ...((((............((((((((((.((((((...))))))..)))))).)))).........................(((((.....)))))..))))............... (-20.38 = -20.22 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:04 2011