| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,287,008 – 6,287,079 |
| Length | 71 |
| Max. P | 0.948871 |
| Location | 6,287,008 – 6,287,079 |
|---|---|
| Length | 71 |
| Sequences | 6 |
| Columns | 80 |
| Reading direction | forward |
| Mean pairwise identity | 58.63 |
| Shannon entropy | 0.77120 |
| G+C content | 0.50866 |
| Mean single sequence MFE | -18.22 |
| Consensus MFE | -10.72 |
| Energy contribution | -10.89 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.53 |
| Mean z-score | -0.51 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.948871 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 6287008 71 + 27905053 --------GCACAUGCAUGCAUGCGGUGGCUUUGUUGCA-GUUCCAUGGAGCAUGGCCCACACUUCAUCGCAUUCAUUUC --------((....))(((.(((((((((((.((((.((-......)).)))).))))........))))))).)))... ( -21.10, z-score = -0.35, R) >droPer1.super_0 10786906 66 - 11822988 --------GUAGACCACAGAUAGAAGCAUCUGAUCCACCUGCCCUACGUGGCCAACCUCAAGCGUUGGUGCGUU------ --------((((....(((((......)))))......))))...(((((.((((((....).)))))))))).------ ( -14.90, z-score = -0.15, R) >droEre2.scaffold_4770 2418916 77 - 17746568 --GCAUAUGUAGAAAAUACAGUGUGGCAGUCUGGUUGCA-GUUCCAUGGAACAUGGCCCACACUUCGUCGCAUUCAUUGC --(((..((((.....))))((((((((((.(((..((.-((((....))))...))))).)))..)))))))....))) ( -20.70, z-score = -0.43, R) >droYak2.chr3R 10317393 79 + 28832112 GCAUACGAGAACGAGUAUGUAUGUGGUAGUUUCGUUGCA-CUUCCAUGGAACAUGGCCCACACUUCAACGCAUACAUUUC ............(((.(((((((((((((.....)))).-...(((((...)))))............)))))))))))) ( -15.80, z-score = 0.33, R) >droSec1.super_0 5466387 61 - 21120651 ------------------GCAUGCGGUGGCUUUGUUGCA-GUUCCAUGGAACAUGGCCCACACUUCAUCGCAUUCAUUCC ------------------(.(((((((((((.((((.((-......)).)))).))))........))))))).)..... ( -18.40, z-score = -1.37, R) >droSim1.chr3R 12413838 61 - 27517382 ------------------GCAUGCGGUGGCUUUGUUGCA-GUUCCAUGGAGCAUGGCCCACACUUCAUCGCAUUCAUUUC ------------------(.(((((((((((.((((.((-......)).)))).))))........))))))).)..... ( -18.40, z-score = -1.11, R) >consensus ________G_A_A_____GCAUGCGGUAGCUUUGUUGCA_GUUCCAUGGAACAUGGCCCACACUUCAUCGCAUUCAUUUC ....................(((((((((.......((..((((....))))...)).......)))))))))....... (-10.72 = -10.89 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:03 2011