| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,286,375 – 6,286,444 |
| Length | 69 |
| Max. P | 0.640303 |
| Location | 6,286,375 – 6,286,444 |
|---|---|
| Length | 69 |
| Sequences | 7 |
| Columns | 80 |
| Reading direction | reverse |
| Mean pairwise identity | 65.46 |
| Shannon entropy | 0.62374 |
| G+C content | 0.47121 |
| Mean single sequence MFE | -14.60 |
| Consensus MFE | -5.80 |
| Energy contribution | -5.93 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.640303 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6286375 69 - 27905053 --------CCGCUCCAAUGCUUGAAACUCCCUGUCAUUUUCGCCAUUACUU---GGAAACCAAAAAGUGGUGAAACGAGC --------..........(((((..((.....))...((((((((((..((---((...))))..))))))))))))))) ( -17.40, z-score = -2.56, R) >droSim1.chr3R 12413207 69 + 27517382 --------CCGCUCCAAUGCUUGAAACUCCCUGUCAUUUUCGCCAUUAUUU---GGAAACCAAAAAGUGGUGAAACGAGU --------..........(((((..((.....))...((((((((((.(((---((...))))).))))))))))))))) ( -18.00, z-score = -2.85, R) >droSec1.super_0 5465753 69 + 21120651 --------CCGCUCCAAUGCUUGAAACUCCCUGUCAUUUUCGCCUUUAUUU---GGAAACCAAAAAGUGGUGAAACGAGU --------..........(((((..((.....))...(((((((.((.(((---((...))))).)).)))))))))))) ( -13.40, z-score = -1.06, R) >droYak2.chr3R 10316756 67 - 28832112 --------CCGCU-CAAUGCUGGAAACUCUCUGUCAGAUUCGCCAUUAUUU---GGAAACCAAAAAGUGGCGAACCGAG- --------...((-(......(....).........(.(((((((((.(((---((...))))).))))))))).))))- ( -20.20, z-score = -2.97, R) >droEre2.scaffold_4770 2418310 67 + 17746568 --------CCGCUCCAAUGCUAG-AACUCUCUGUCAGUUUCGCCAUUAUUC---GGAAACCAAAAAGUGGUGAGCCCAG- --------..((((...((.(((-(....)))).)).....((((((....---(....).....))))))))))....- ( -13.80, z-score = -1.01, R) >droPer1.super_0 10786293 80 + 11822988 CUGCUUCACUCCCUUGAGCCUAGCCUCUCUCUUUCGUGCAUGCCACAUGCCGCGUUAAAGUAAAAAGUGUCGAAAAAAGC ..(((...(((....)))...))).......(((((.(((((...)))))(((.............))).)))))..... ( -11.12, z-score = 0.77, R) >dp4.chr2 23612943 67 + 30794189 CUGCUCCACUCCCUUGAGCCUAGCCUCGCUCUUUCGUGCAUGCCAC--------CAAAAGUAAAAAGUGUCGAAA----- ...............((((........)))).((((.((((...((--------.....)).....)))))))).----- ( -8.30, z-score = 0.42, R) >consensus ________CCGCUCCAAUGCUAGAAACUCUCUGUCAUUUUCGCCAUUAUUU___GGAAACCAAAAAGUGGUGAAACGAG_ ......................................(((((((((.......(....).....)))))))))...... ( -5.80 = -5.93 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:03:03 2011