| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,871,126 – 6,871,226 |
| Length | 100 |
| Max. P | 0.996451 |
| Location | 6,871,126 – 6,871,226 |
|---|---|
| Length | 100 |
| Sequences | 7 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 61.55 |
| Shannon entropy | 0.72719 |
| G+C content | 0.35716 |
| Mean single sequence MFE | -27.00 |
| Consensus MFE | -6.23 |
| Energy contribution | -6.64 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.56 |
| Mean z-score | -3.40 |
| Structure conservation index | 0.23 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.93 |
| SVM RNA-class probability | 0.996451 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6871126 100 + 23011544 UUGAAUGCAUGGCGGUGGAAAAGUCAAUUAGUUAAUUGGCGGUCUAAUUGACUUGACUUUACAGUGCUCGUCAUGCGUAUCAAUAAUACAAAUAGCUUCU ((((((((((((((((.(.(((((((...((((((((((....))))))))))))))))).)...)).)))))))))).))))................. ( -33.00, z-score = -4.36, R) >droSim1.chr2L 6671910 100 + 22036055 UUGAAUGCAUGGCGGUAGAAAAGUCAAUUAGUUAAUUGGCGCUCUAAUUGACUUGACUUUGCAGUGCUCGCCAUGCGUAUCAAUAAUACAAAUAGCCUCU (((((((((((((((((..(((((((...((((((((((....)))))))))))))))))....))).)))))))))).))))................. ( -36.80, z-score = -4.94, R) >droSec1.super_3 2411094 100 + 7220098 UUGAAUGCAUGGCGGUAGAAAAGUCAAUUAGUUAAUUGGCGGUCUAAUUGACUUGACUUUGCAGAACUCGCCAUGCGUAUCAAUAAUACAAAUAGCCUCU ((((((((((((((((...(((((((...((((((((((....))))))))))))))))).....)).)))))))))).))))................. ( -35.20, z-score = -4.91, R) >droYak2.chr2L 16291249 96 - 22324452 UCGAAAACAUCGCGUUAGAAA-GUCAAUUGGUUAAUUGG---UCUAAUUGACUUAGCGUUAAAGUGCUCGGCGUGCAUAUCAAUAAUUCAAAUAGCCCCU ..(((......((((((...(-(((((((((........---.))))))))))))))))....((((.......))))........)))........... ( -19.70, z-score = -0.88, R) >droEre2.scaffold_4929 15789893 98 + 26641161 UUGAAUACAGCGCGGUGGAAA-GUCAAUUGGUUAAU-GGCUGUCUAAUUAACUUAGCUUUGCAGUGCGCUGCGUUCAUAUCAAUAAUUUAAAUAGUCCCU .((((..(((((((.((.(((-((.....(((((((-.........)))))))..))))).)).)))))))..))))....................... ( -30.00, z-score = -3.13, R) >dp4.chr4_group5 369470 79 + 2436548 -------------UGGAAACGAAACUGUUUGAUAUUUUUAAAUCUAGUUGGUUUGGCUU--CUAUAUUUACUAUAUUUA-----AGUCGAACUGGUUUU- -------------.(....)((((((((((((.....))))))......((((((((((--..((((.....))))..)-----)))))))))))))))- ( -17.70, z-score = -3.12, R) >droPer1.super_5 4866968 79 + 6813705 -------------UGGAAACGAAACUUUUUGAUAUUUUUAAAUCCAGUUGGUUUGGCUU--CUAUAUUUACUAUAUUUA-----AGUCGAACUGGUUUU- -------------..(((((..((((.(((((.....)))))...))))((((((((((--..((((.....))))..)-----))))))))).)))))- ( -16.60, z-score = -2.49, R) >consensus UUGAAUGCAUGGCGGUAGAAAAGUCAAUUAGUUAAUUGGCGGUCUAAUUGACUUGGCUUUGCAGUGCUCGCCAUGCGUAUCAAUAAUACAAAUAGCCUCU ..............(((((.(((((((((((............)))))))))))...)))))...................................... ( -6.23 = -6.64 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:22:26 2011