Locus 9367

Sequence ID dm3.chr3R
Location 6,271,198 – 6,271,299
Length 101
Max. P 0.624598
window12837

overview

Window 7

Location 6,271,198 – 6,271,299
Length 101
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 83.09
Shannon entropy 0.27228
G+C content 0.55094
Mean single sequence MFE -40.65
Consensus MFE -24.50
Energy contribution -26.00
Covariance contribution 1.50
Combinations/Pair 1.14
Mean z-score -2.14
Structure conservation index 0.60
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.28
SVM RNA-class probability 0.624598
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 6271198 101 + 27905053
GCUUUUCCUGCUUUUCCCGCUUUAGCAGCCUU-UGCUGCCUUUGCUGCUCGUGCUGAUAACGUGGCCAGCAGCGUUGGUCAGCAGUGGUCGGAUAAAAGGAU
.....((((.....(((.((....)).(((.(-(((((((..(((((((.(.(((........)))))))))))..)).)))))).))).)))....)))). ( -39.90, z-score =  -2.14, R)
>droSim1.chr3R 12398110 101 - 27517382
GCUUUUCCUGCUUUUCCCGCUUUCGCAGCCUU-UGCUGCCUUUGCUGCUCGUGCUGAUAACGUGGCCAGCAGCGUUGGUCAGCAGUGGUCGGAUAAAAGGAU
.....((((.....(((.((....)).(((.(-(((((((..(((((((.(.(((........)))))))))))..)).)))))).))).)))....)))). ( -39.60, z-score =  -2.12, R)
>droSec1.super_0 5450720 101 - 21120651
GCUUUUCCUGCUUUUCCCGCUUUCGCAGCCUU-UGCUGCCUUUGCUGCUCGUGCUGAUAACGUGGCCAGCAGCGUUGGUCAGCAGUGGUCGGAUAAAAGGAU
.....((((.....(((.((....)).(((.(-(((((((..(((((((.(.(((........)))))))))))..)).)))))).))).)))....)))). ( -39.60, z-score =  -2.12, R)
>droAna3.scaffold_13340 22873429 100 - 23697760
GAUUUUGCUUCUGCUUUCGCAAUAGUAUCCUGGCGCUGCCUCGCCGGCUGAUAACGGGGCC--GGCCAACAGCGCUGGUCAGCAGAGGCCGGAUAAAAGGAU
.(((..(((((((((...((....))...(..((((((....(((((((........))))--)))...))))))..)..)))))))))..)))........ ( -43.50, z-score =  -2.20, R)
>consensus
GCUUUUCCUGCUUUUCCCGCUUUAGCAGCCUU_UGCUGCCUUUGCUGCUCGUGCUGAUAACGUGGCCAGCAGCGUUGGUCAGCAGUGGUCGGAUAAAAGGAU
.....((((.....(((.((....)).(((...(((((((..(((((((...(((........))).)))))))..)).)))))..))).)))....)))). (-24.50 = -26.00 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:57 2011