| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,269,330 – 6,269,423 |
| Length | 93 |
| Max. P | 0.988119 |
| Location | 6,269,330 – 6,269,423 |
|---|---|
| Length | 93 |
| Sequences | 10 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 76.89 |
| Shannon entropy | 0.46167 |
| G+C content | 0.38674 |
| Mean single sequence MFE | -25.80 |
| Consensus MFE | -13.26 |
| Energy contribution | -13.38 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.31 |
| SVM RNA-class probability | 0.988119 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6269330 93 - 27905053 ----------UGUUGUUGA-CUUGUAACUGAUGACGCUGCUCUUUGUGGCGUUGAA-AAUUUUGUGCUGAUUUUGCA----UGAAACAAUUGGU-AUAUAUCAUUGACUU ----------.(((..(((-..((((.(..(((((((..(.....)..)))))...-..(((..(((.......)))----..)))..))..))-)))..)))..))).. ( -25.20, z-score = -3.76, R) >droSim1.chr3R 12396306 93 + 27517382 ----------UGUUGUUGA-CUUGUAACUGAUGACGCUGCUCUUUGUGGCGUUGAA-AAUUUUGUGCUGAUUUUGCA----UGAAACAAUUGGU-AUAUAUCAUUGACUU ----------.(((..(((-..((((.(..(((((((..(.....)..)))))...-..(((..(((.......)))----..)))..))..))-)))..)))..))).. ( -25.20, z-score = -3.76, R) >droSec1.super_0 5448870 93 + 21120651 ----------UGUUGUUGA-CUUGUAACUGAUGACGCUGCUCUUUGUGGCGUUGAA-AACUUUGUGCUGAUUUUGCA----UGAAACAAUUGGU-AUAUAUCAUUGACUU ----------.(((..(((-..((((.(..(((((((..(.....)..)))))...-...((..(((.......)))----..))...))..))-)))..)))..))).. ( -24.40, z-score = -3.50, R) >droYak2.chr3R 10299222 93 - 28832112 ----------UGUUGUUGA-CUUGUAACUGAUGACGCUGCUCUUUGUGGCGUUGAA-AAUUUUGUGCUGAUUUAGCA----UGAAACAAUUGGU-AUAUAUCAUUGACUU ----------.(((..(((-..((((.(..(((((((..(.....)..)))))...-..(((..(((((...)))))----..)))..))..))-)))..)))..))).. ( -26.00, z-score = -3.73, R) >droEre2.scaffold_4770 2401454 93 + 17746568 ----------UGUUGUUGA-CUUGUAACUGAUGACGCUGCUCUUUGUGGCGUUGAA-AAUUUUGUGCUGAUUUAGCA----UGAAACAAUUGGU-AUAUAUCAUUGACUU ----------.(((..(((-..((((.(..(((((((..(.....)..)))))...-..(((..(((((...)))))----..)))..))..))-)))..)))..))).. ( -26.00, z-score = -3.73, R) >droAna3.scaffold_13340 22871835 95 + 23697760 ------GUGUUGUAGUUCA-CUCGUAACUGAUGACGCUGCUCUUUGCGGCGUUGAA-AAUUUUGUGCUGAUUUGGCA----UGAAA--AUGGAG-UCAUCGCAGAGGCUU ------.............-(((.....((((((((((((.....)))))......-..(((..((((.....))))----..)))--.....)-))))))..))).... ( -28.20, z-score = -1.13, R) >droPer1.super_0 10770216 101 + 11822988 GUUUUGCUGUUGACUCGAA-CUCGUAACUGAUGACGCUGCUCUUUGCGGCGUUGAA-AAUUUUGUGCUGAUUUUGCA----UGAAACGAUG--U-GGAUGUCACGGACUU ......((((.(((((..(-(((((.......((((((((.....))))))))...-...((..(((.......)))----..)))))).)--)-.)).))))))).... ( -30.90, z-score = -3.17, R) >dp4.chr2 23596686 101 + 30794189 GUUUUGCUGUUGACUCGAA-CUCGUAACUGAUGACGCUGCUCUUUGCGGCGUUGAA-AAUUUUGUGCUGAUUUUGCA----CGAAACGAUA--C-GAAUGUCACGGACUU ......((((.((((((..-.((((.......((((((((.....))))))))...-...(((((((.......)))----))))))))..--)-))..))))))).... ( -32.20, z-score = -3.71, R) >droWil1.scaffold_181108 46892 105 - 4707319 -----GUUAUUGUUGUUCAGCAUGUAACUGAUGACUCUGCUCAUUGUUGUAUCGAAGGAUUUUCUGCUGAUUUCGCAAUUUCACAUCUACAAACAGGAUGUCAAAGACUU -----(..(((((...((((((..((((.(((((......))))))))).(((....)))....))))))....)))))..)((((((.......))))))......... ( -22.20, z-score = -0.16, R) >droVir3.scaffold_13047 1231704 98 - 19223366 --GUUGUUGUUGUAUCUGU-UUUGUAACUGAUGACGCUGCUUUUCGUUGCGUUGAA-CAUUUUGUGCUGAUUUUGCA----UUAAGCGAUU--U-UGAUGUCAAUGUCU- --.....((((..(((.((-(....))).)))(((((.((.....)).))))).))-)).........(((.(((((----(((((....)--)-))))).))).))).- ( -17.70, z-score = 0.48, R) >consensus __________UGUUGUUGA_CUUGUAACUGAUGACGCUGCUCUUUGUGGCGUUGAA_AAUUUUGUGCUGAUUUUGCA____UGAAACAAUUGGU_AUAUAUCAUUGACUU .......................((...((((((((((((.....))))))))...........(((.......)))......................))))...)).. (-13.26 = -13.38 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:57 2011