| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,266,358 – 6,266,449 |
| Length | 91 |
| Max. P | 0.995758 |
| Location | 6,266,358 – 6,266,449 |
|---|---|
| Length | 91 |
| Sequences | 10 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.10 |
| Shannon entropy | 0.22959 |
| G+C content | 0.27867 |
| Mean single sequence MFE | -19.07 |
| Consensus MFE | -16.10 |
| Energy contribution | -16.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.09 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.84 |
| SVM RNA-class probability | 0.995758 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6266358 91 + 27905053 ------GUGCAUCCUCAAUUUCCCUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACACUGAUGUCCUU----------------------- ------(..((((...((........)).(((((.(((((((((((.(((((((......)))))))..))))))))))).)))))..))))..)..----------------------- ( -17.90, z-score = -3.26, R) >droSim1.chr3R 12391452 91 - 27517382 ------GUGCAUCCUCAAUUUCCCUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACACUGAUGUCCUU----------------------- ------(..((((...((........)).(((((.(((((((((((.(((((((......)))))))..))))))))))).)))))..))))..)..----------------------- ( -17.90, z-score = -3.26, R) >droSec1.super_0 5445940 91 - 21120651 ------GUGCAUCCUCAAUUUCCCUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACACUGAUGUCCUU----------------------- ------(..((((...((........)).(((((.(((((((((((.(((((((......)))))))..))))))))))).)))))..))))..)..----------------------- ( -17.90, z-score = -3.26, R) >droYak2.chr3R 10296161 91 + 28832112 ------GUGCAUCCUCAAUUUCCCUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACACUGAUGUCCUU----------------------- ------(..((((...((........)).(((((.(((((((((((.(((((((......)))))))..))))))))))).)))))..))))..)..----------------------- ( -17.90, z-score = -3.26, R) >droEre2.scaffold_4770 2398536 91 - 17746568 ------GUGCAUCCUCAAUUUCCCUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACACUGAUGUCCUU----------------------- ------(..((((...((........)).(((((.(((((((((((.(((((((......)))))))..))))))))))).)))))..))))..)..----------------------- ( -17.90, z-score = -3.26, R) >droAna3.scaffold_13340 22869369 91 - 23697760 ------CUGCAUCCUCAAUUUCCCUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACACUGAUGUCCUG----------------------- ------..(((((...((........)).(((((.(((((((((((.(((((((......)))))))..))))))))))).)))))..)))))....----------------------- ( -17.10, z-score = -3.33, R) >droWil1.scaffold_181108 43596 91 + 4707319 ------CUGCAUCCUCAAUUUCCUUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACACUGAUGUCCUU----------------------- ------..(((((...((........)).(((((.(((((((((((.(((((((......)))))))..))))))))))).)))))..)))))....----------------------- ( -17.10, z-score = -3.12, R) >droVir3.scaffold_13047 1229071 117 + 19223366 ---UCUGUGCAUCCUCAAUUUCCUUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACACUGAAGCAUCUCGACAAUGCCUGUACGCCCCGAU ---...(((((..............(((((((((.(((((((((((.(((((((......)))))))..))))))))))).))))).))))((((.......)))).)))))........ ( -23.80, z-score = -3.18, R) >droMoj3.scaffold_6540 5273608 103 + 34148556 ---UCCGUGCAUCCUCAAUUUCCUUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACACUGAAGCGUCUCGACAACGU-------------- ---..(((..............((((...(((((.(((((((((((.(((((((......)))))))..))))))))))).)))))..)))).((....)).))).-------------- ( -19.00, z-score = -1.79, R) >droGri2.scaffold_14906 9139857 108 - 14172833 AUAGCUGUGCAUCCUCAAUUUCCUUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACACUGAAGCAUCUCGGCACCGCCU------------ ...((.((((............((((...(((((.(((((((((((.(((((((......)))))))..))))))))))).)))))..)))).......)))).))..------------ ( -24.21, z-score = -3.17, R) >consensus ______GUGCAUCCUCAAUUUCCCUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACACUGAUGUCCUU_______________________ .............................(((((.(((((((((((.(((((((......)))))))..))))))))))).))))).................................. (-16.10 = -16.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:56 2011