| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,259,656 – 6,259,749 |
| Length | 93 |
| Max. P | 0.990254 |
| Location | 6,259,656 – 6,259,749 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 89.42 |
| Shannon entropy | 0.20318 |
| G+C content | 0.43766 |
| Mean single sequence MFE | -30.26 |
| Consensus MFE | -23.55 |
| Energy contribution | -23.64 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.07 |
| Mean z-score | -3.05 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.41 |
| SVM RNA-class probability | 0.990254 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6259656 93 + 27905053 GGCUGCAAAAGUCGAUUUUUGUUGGUUUAGGUCAGUUU-AGUUA----------------GCUGGCUUUGACAGCUC-AAAGUCGAGGUCAACUUUUGUAUGCCCAUCAUC------- (((((((((((((((((((.((((....(((((((((.-....)----------------))))))))...))))..-))))))))......)))))))).))).......------- ( -32.60, z-score = -4.14, R) >droSim1.chr3R 12384574 93 - 27517382 GGCUGCAAAAGUCGAUUUUUGUUGGUUUAGGUCAGUUU-AGUUA----------------GCUGGCUUUGACAGCUC-AAAGUCGAGGUCAACUUUUGUAUGCCCAUCAUC------- (((((((((((((((((((.((((....(((((((((.-....)----------------))))))))...))))..-))))))))......)))))))).))).......------- ( -32.60, z-score = -4.14, R) >droSec1.super_0 5439211 93 - 21120651 GGCUGCAAAAGUCGAUUUUUGUUGGUUUAGGUCAGUUU-AGUUA----------------GCUGGCUUUGACAGCUC-AAAGUCGAGGUCAACUUUUGUAUGCCCAUCAUC------- (((((((((((((((((((.((((....(((((((((.-....)----------------))))))))...))))..-))))))))......)))))))).))).......------- ( -32.60, z-score = -4.14, R) >droYak2.chr3R 10289338 93 + 28832112 GGCUGCAAAAGUCGAUUUUUGUUGGUUUAGGUCAGUUU-AGUUA----------------GCUGGCUUUGACAGCUC-AAAGUCGAGGUCAACUUUUGUAUGCCCAUCAUC------- (((((((((((((((((((.((((....(((((((((.-....)----------------))))))))...))))..-))))))))......)))))))).))).......------- ( -32.60, z-score = -4.14, R) >droEre2.scaffold_4770 2391932 93 - 17746568 GGCUGCAAAAGUCGAUUUUUGUUGGUUUAGGUCAGUUU-AGUUA----------------GCUGGCUUUGACAGCUC-AAAGUCGAGGUCAACUUUUGUAUGCCCAUCAUC------- (((((((((((((((((((.((((....(((((((((.-....)----------------))))))))...))))..-))))))))......)))))))).))).......------- ( -32.60, z-score = -4.14, R) >droAna3.scaffold_13340 22862288 93 - 23697760 GGCUGCAAA-GUCGAUUUUUGUUGGUUUAGGUCAGUUUAGGUAG----------------CCUGGCUCUGACAGCUC-AAAGUCGAGGUCAACUUUUGUGUGCCCAUCAUC------- (((((((((-((.((((((..(((((....(((((.(((((...----------------)))))..))))).)).)-))....)))))).)).)))))).))).......------- ( -24.20, z-score = -0.41, R) >dp4.chr2 23585659 94 - 30794189 GGCGGCAAAAGUCGAUUUUUGUUGGUUUAGGUCAGUUUUAGUUA----------------GCUGCCUUUGACAGCUC-AAAGUCGAGGUCAACUUUUGUAUGCCCAUCAUC------- (((((((((((((((((((.((((....(((.(((((......)----------------)))))))....))))..-))))))))......))))))).)))).......------- ( -30.30, z-score = -3.48, R) >droWil1.scaffold_181108 33767 118 + 4707319 GGCUGCAAAAGUCAAUUUUUGUUGGUUUAGGUCAGUUUAGUUUUGCUGCCAUUGCUGGCUGCUGGCUUUGACAGCUCCAAAGUCGAGGUCAACUUUUGUAUGCCGCCUGCCCGUCAUC ((((((((((((........((..((...((.((((........))))))...))..))...((((((((((.........))))))))))))))))))).))).............. ( -38.70, z-score = -1.76, R) >droMoj3.scaffold_6540 5262658 90 + 34148556 GGCUGCAAA-GUCGAUUUUUGUUGGUUUAGGUCAGUU--AGUU-----------------UUUGGCUUUGACAGCUC-AAAGUCGAGGUCAACUUUUGUAUGCCCAUCAUC------- (((((((((-(((((((((.((((....(((((((..--....-----------------.)))))))...))))..-)))))))).......))))))).))).......------- ( -24.91, z-score = -2.20, R) >droVir3.scaffold_13047 1219432 90 + 19223366 GGCUGCAAA-GUCGAUUUUUGUUGGUUUAGGUCAGUU--AGUU-----------------UUUGGCUUUGACAGCUC-AAAGUCGAGGUCAACUUUUGUAUGCCCAUCAUC------- (((((((((-(((((((((.((((....(((((((..--....-----------------.)))))))...))))..-)))))))).......))))))).))).......------- ( -24.91, z-score = -2.20, R) >droGri2.scaffold_14906 9126247 89 - 14172833 GGCUGCAAA-GUCGAUUUU-GUUGGUUUAGGUCAGUU--AGUU-----------------UUUGGCUUUGACAGCUC-AAAGUCGAGGUCAACUUUUGUAUGCCCAUCAUC------- (((((((((-(((((((((-(...(((.(((((((..--....-----------------.))))))).)))....)-)))))))).......))))))).))).......------- ( -26.81, z-score = -2.83, R) >consensus GGCUGCAAAAGUCGAUUUUUGUUGGUUUAGGUCAGUUU_AGUUA________________GCUGGCUUUGACAGCUC_AAAGUCGAGGUCAACUUUUGUAUGCCCAUCAUC_______ (((((((((..((((((((.((((....(((((((..........................)))))))...))))...))))))))((....)))))))).))).............. (-23.55 = -23.64 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:55 2011