| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,251,304 – 6,251,399 |
| Length | 95 |
| Max. P | 0.542259 |
| Location | 6,251,304 – 6,251,399 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 61.29 |
| Shannon entropy | 0.69899 |
| G+C content | 0.37444 |
| Mean single sequence MFE | -24.76 |
| Consensus MFE | -7.07 |
| Energy contribution | -6.57 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.82 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.542259 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6251304 95 - 27905053 UUUUAUUAUAUGUAACUAGUAAUUUUCUAAGU-GUAGCUAUAGUUGCACUUGGAUUGCCAGCGAAGAAUACUUAUAAAAUAUCUUGAACUUUACAA------- .((((..((((......((((....(((((((-(((((....))))))))))))(((....)))....))))......))))..))))........------- ( -20.70, z-score = -2.11, R) >droSim1.chr3R 12376252 95 + 27517382 UUUUAUUGUAUGUAACUAGUAAUUCUCUGAGU-GUAGCUAUAGUUGCACUUGGAUUGCCAGCGAAGAAUCCUUAUAAAAUAUCUUGAACUUUACAA------- ..........(((((((.((((...((..(((-(((((....))))))))..)))))).))..(((....))).................))))).------- ( -19.30, z-score = -1.29, R) >droSec1.super_0 5430812 95 + 21120651 UUUUAUUAUAUGUAACUAGUAAUUCUCUGAGU-GUAGCUAUAGUUGCACUUAGAUUGCCAGCGAAGAAUCCUUAUAAAAUAUCUUGAACUUUACAA------- ..........(((((((.((((...(((((((-(((((....)))))))))))))))).))..(((....))).................))))).------- ( -20.20, z-score = -2.05, R) >droYak2.chr3R 10280226 95 - 28832112 AAUUAUCGGAUGUGGGUAGUUAUUCUCUAAGU-GUAGCAAUAGUUGCACUUGGAUUGCUGGCGAGGAAUCCUUAUAAAAUAUCUUCAAACUUACAA------- ..........(((((((.(((((..(((((((-(((((....))))))))))))..).))))(((((..............)))))..))))))).------- ( -26.74, z-score = -3.01, R) >droEre2.scaffold_4770 2383174 95 + 17746568 AAUUGCUUGAUUUGGUUAGUUAUUCGCCCAGU-GUAGCAAUAGUUGCACUUGGAUAGCUGGCGAAGAAUCCGCAUAAAAUAUCUUGAACUUUACAA------- ...(((..(((((.((((((((((((...(((-(((((....))))))))))))))))))))...))))).)))......................------- ( -27.50, z-score = -2.70, R) >dp4.chr2 23577706 102 + 30794189 CUCAAUCAGGAGCAACCAUUAGCGGCGGCAGCAGCAGUUGCAGCCAUUUUGGCCGCUCUAGCUGCUAGCUUUCAUAAAG-AUUUUGCCGUGCAAGAAAAUCGA .....((.((.....))....((((((((((((((((..((.(((.....))).)).)).)))))).))).((.....)-)....)))))....))....... ( -30.70, z-score = -0.07, R) >droPer1.super_0 10745829 102 + 11822988 CUCAAUCAGGAGCAACCAUUAGCGGCGGCAGCAGCAGUUGCAGCCAUUUUGGCCGCUCUAGCUCCUAGCUUUCAUAAAG-AUUUUGCCGUGCAAGAAAAUCGA .......((((((......(((.(((((((((....))))).(((.....)))))))))))))))).............-.((((((...))))))....... ( -28.20, z-score = 0.17, R) >consensus UUUUAUUAGAUGUAACUAGUAAUUCUCUCAGU_GUAGCUAUAGUUGCACUUGGAUUGCUAGCGAAGAAUCCUUAUAAAAUAUCUUGAACUUUACAA_______ ..........................((((((.(((((....))))))))))).................................................. ( -7.07 = -6.57 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:54 2011