| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,242,431 – 6,242,522 |
| Length | 91 |
| Max. P | 0.976705 |
| Location | 6,242,431 – 6,242,522 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 87.14 |
| Shannon entropy | 0.23427 |
| G+C content | 0.39816 |
| Mean single sequence MFE | -22.94 |
| Consensus MFE | -17.82 |
| Energy contribution | -19.94 |
| Covariance contribution | 2.12 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.96 |
| SVM RNA-class probability | 0.976705 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6242431 91 - 27905053 UUUAUAUCGCAAAGUAAUUUAAAGCGAUGAAAUUAUCUUGUGAACACUUCGACCGACGAAUUUGGCUAUAUUUAUGGCCCACACUCGUUGG ......((((((..((((((.........))))))..)))))).........(((((((....((((((....)))))).....))))))) ( -24.70, z-score = -3.65, R) >droSim1.chr3R 12366819 91 + 27517382 UUUAUAUCGCAAAGUAAUUUAAAGCUAUAGAAUUAUCUUGUGAGCACUGCGACCGACGAAUUUGACUAUAUUUAUGGCCCAAACUCGUUGG ......((((((..((((((.........))))))..)))))).........(((((((.((((.((((....))))..)))).))))))) ( -22.40, z-score = -2.92, R) >droSec1.super_0 5419653 91 + 21120651 UUUAUAUCGCAAAGUAAUUUAAAGCGAUGGAAUUAUCUUGUGAGCACUGCGACCGACGAAUUUGACUAUAUUUAUGGCCCACACUCGUUGG ......((((((..((((((.........))))))..)))))).........(((((((.(.((.((((....))))..)).).))))))) ( -19.00, z-score = -1.02, R) >droYak2.chr3R 10270955 79 - 28832112 UACAUUUCGCUAAGUAAUUUAAAG------------CUUGUGAGCACUGCGACCGACGAAUUUGGCUAUAUUUAUGGCCCACACUCGUUGG .....(((((.((((........)------------))))))))........(((((((....((((((....)))))).....))))))) ( -21.50, z-score = -2.50, R) >droEre2.scaffold_4770 2371167 91 + 17746568 GACAUAUCGCAAAGUAAUUUAAAGCGAUGGAAUUUGCUUGCGAGCAAUGCAACCGACGAAUUUGGCUAUAUUUAUGGCCCACACUCGUUGG (.(((.(((((((....))).((((((......))))))))))...))))..(((((((....((((((....)))))).....))))))) ( -27.10, z-score = -2.87, R) >consensus UUUAUAUCGCAAAGUAAUUUAAAGCGAUGGAAUUAUCUUGUGAGCACUGCGACCGACGAAUUUGGCUAUAUUUAUGGCCCACACUCGUUGG ......((((((.(((((((.........))))))).)))))).........(((((((....((((((....)))))).....))))))) (-17.82 = -19.94 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:53 2011