| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,235,131 – 6,235,230 |
| Length | 99 |
| Max. P | 0.636238 |
| Location | 6,235,131 – 6,235,230 |
|---|---|
| Length | 99 |
| Sequences | 15 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 76.26 |
| Shannon entropy | 0.54665 |
| G+C content | 0.58721 |
| Mean single sequence MFE | -33.81 |
| Consensus MFE | -13.86 |
| Energy contribution | -13.62 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.59 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.636238 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6235131 99 - 27905053 AAGGCACGUUGCCUGCUCUUCCUAGGCGAUUCCGUCACCACGGAUCACAUCUCGCCGGCUGGAUCUAUUGCUAGAACCUCGCCUGCUGCCCGAUUCUUG ..((((.((((((((.......))))))))(((((....))))).........((.(((.((.((((....)))).))..))).))))))......... ( -30.30, z-score = -1.61, R) >droSim1.chr3R 12359264 99 + 27517382 AAGGCACGUUGCCUGCUCUUCCUGGGCGAUUCCGUGACCACGGACCACAUCUCGCCGGCUGGAUCCAUUGCUAGGACCUCGCCUGCUGCCCGAUUCCUG .((((.....))))........(((((((((((((....)))))....)))..((.(((.((.(((.......)))))..))).)).)))))....... ( -33.20, z-score = -1.22, R) >droSec1.super_0 5412363 99 + 21120651 AAGGCACGUUGCCUGCUCUUCCUGGGCGAUUCCGUGACCACGGAUCACAUCUCGCCGGCUGGAUCCAUUGCUAGGACCUCGCCUGCUGCCCGAUUCUUG .((((.....))))........((((((((.((((....))))))).......((.(((.((.(((.......)))))..))).)).)))))....... ( -34.50, z-score = -1.65, R) >droYak2.chr3R 10263606 99 - 28832112 AAGGCACGUUGCCUGCUCUUCCUGGGCGAUUCCGUGACCACGGAUCACAUCUCGCCGGCAGGAUCCAUUGCUAGGACCUCGCCUGCUGCUCGAUUCCUG .((((.....))))........((((((((.((((....))))))).......((.((((((.(((.......)))))).))).)).)))))....... ( -33.60, z-score = -1.04, R) >droEre2.scaffold_4770 2363755 99 + 17746568 AAGGCACGUUGCCUGCUCUUCCUGGGCGAUUCCGUGACCACGGAUCACAUCUCGCCGGCUGGAUCCAUUGCCAGGACCUCGCCUGCUGCCCGAUUCCUG .((((.....))))........((((((((.((((....))))))).......((.(((.((.(((.......)))))..))).)).)))))....... ( -34.50, z-score = -1.33, R) >droAna3.scaffold_13340 10927479 99 + 23697760 AAUGCACGCUGCCUUCUCAUGCUGGGCGACUCGGUGACCACCGAUCACAUCUCUCCAGCAGGAUCCAUUGCCAGGAGAUCUCCUGCAGCGCGCUACUUG ...((.((((((....((.(((((((.((.(((((....))))).....)).).)))))).)).........((((....)))))))))).))...... ( -35.40, z-score = -2.02, R) >dp4.chr2 23561819 99 + 30794189 AAGGCGCGCUGUCUGCUCUUCCUGGGCGACUCUGUGACCACGGAUCAUAUCUCGCCUGCUGGCUCCAUUGCCAGGAAUUCGCCGGCCGCUCGAUUCCUG .(((((.((.(((.((..(((((((((((...((((((....).)))))..))))))...(((......))))))))...)).))).)).))...))). ( -34.60, z-score = -1.08, R) >droPer1.super_0 10729983 99 + 11822988 AAGGCGCGCUGUCUGCUCUUCCUGGGCGACUCUGUGACCACGGAUCACAUCUCGCCUGCUGGCUCCAUUGCCAGGAAUUCGCCGGCCGCUCGAUUCCUG .(((((.((.(((.((..(((((((((((...((((((....).)))))..))))))...(((......))))))))...)).))).)).))...))). ( -36.50, z-score = -1.61, R) >droVir3.scaffold_13047 1192632 99 - 19223366 AAGGCGCGCUGUUUGCUCUUCUUGGGUGACUCUGUGACCACUGAUCAUAUCUCGCCCGCUGGCUCCAUUGCCAGAAACUCGCCUGCGGCUCGCUUCCUG .(((((.(((((..((.......((((((...(((((.......)))))..)))))).(((((......)))))......))..))))).))))).... ( -37.70, z-score = -3.69, R) >droMoj3.scaffold_6540 5223622 99 - 34148556 AAGGCGCGCUGCUUGCUCUUCUUGGGCGACUCUGUGACCACAGAUCACAUUUCACCAGCCGGCUCCAUCGCCAGAAACUCGCCAGCAGCUCGUUUCCUC .(((((.((((((.((..((((..(((((.(((((....)))))..........((....)).....)))))))))....)).)))))).))))).... ( -31.60, z-score = -1.50, R) >droGri2.scaffold_14906 9093703 99 + 14172833 AACGCGCGCUGUCUGCUCUUCUUGGGUGAUUCUGUGACCACAGAUCACAUCUCACCCGCUGGUUCUAUAGCCAGAAACUCGCCGGCGGCACGCUUCCUC ...(((.((((((.((.......((((((...(((((.......)))))..)))))).(((((......)))))......)).)))))).)))...... ( -39.30, z-score = -4.12, R) >droWil1.scaffold_181089 1481161 99 - 12369635 AAGGCCCGCUGUCUUUUGUUCUUGGGUGACUCUGUGACCACAGAUCAUAUUUCACCAGCUGGGUCGAUUGCUCGCAAUUCCCCAGCUGCUCGUUAUCUG (((((.....)))))........((((((((((((....)))))...........((((((((..(((((....))))).))))))))...))))))). ( -31.80, z-score = -2.41, R) >anoGam1.chr2L 44188855 99 - 48795086 AACGCGCGGGCGCUGCUGAAUCUGGGCGAUUCCGUCACGACCGAUCACAUCUCGCCGGCCGGUUCGAUCGCACGCAACAGCCCGGCCGCACGGUUCCUG ..((.((((.((..((((.......(((((((((.(.((..(((.......))).))).)))...))))))......)))).)).)))).))....... ( -32.52, z-score = 1.65, R) >apiMel3.GroupUn 19631023 99 - 399230636 AAAGCACGUGUUCUUUUAAAUCUUGGAGAUUCUGUUACGACAGAUCAUAUUAGUCCGGCUGGUAGUAUUGCACGCAAUUCUCCAGCAGCACGAUAUCUU ......((((((...........(((((((.((((....))))))).......))))(((((.((.((((....)))).)))))))))))))....... ( -25.71, z-score = -1.89, R) >triCas2.chrUn_103 167698 99 - 629847 GGGGCCAGGGUUUUGCUCUAUUUGGGGGAUUCGGUCACCACUGACCACAUUAGCCCUGCCGGCUCCAUUGGACGGAACAGUCCAGCUGCGCGGUAUUUG (((((..(((((((.(.......).)))))))(((((....)))))......)))))((((((....((((((......))))))..)).))))..... ( -35.90, z-score = -0.65, R) >consensus AAGGCACGCUGCCUGCUCUUCCUGGGCGAUUCUGUGACCACGGAUCACAUCUCGCCGGCUGGAUCCAUUGCCAGGAACUCGCCUGCUGCUCGAUUCCUG ..(((...................(((((.(((((....))))).......))))).((.((...................)).)).)))......... (-13.86 = -13.62 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:52 2011