| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,219,987 – 6,220,090 |
| Length | 103 |
| Max. P | 0.994210 |
| Location | 6,219,987 – 6,220,090 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 88.22 |
| Shannon entropy | 0.21097 |
| G+C content | 0.33268 |
| Mean single sequence MFE | -25.36 |
| Consensus MFE | -19.53 |
| Energy contribution | -19.89 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.19 |
| Mean z-score | -3.27 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.68 |
| SVM RNA-class probability | 0.994210 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6219987 103 - 27905053 GUUUUUAUGCC--UUUGUUGGUCUCUGUUUAGCC-AUAAAUAUUAGGGCUAACUGAUUAAAGCCGAAAACAACUUGUUCUUUUCGGUUUUGAUUAAUCUUUACUUC ...........--...((((((((.((((((...-.))))))...))))))))((((((((((((((((.((....)).))))))))))))))))........... ( -27.30, z-score = -4.31, R) >droSim1.chr3R 12340052 105 + 27517382 GUUUUUAUGCCGUUUGUUUGUCUUUUUUUGAGCA-AUAAAUAGUAGGGCUAACUGAUUAAAGCCGAAAACAACUUGUUCUUUUCGGUUUUGAUUAAUCUUUUCUUC ........(((.((((((((((((.....)))..-)))))))).).)))....((((((((((((((((.((....)).))))))))))))))))........... ( -25.80, z-score = -3.43, R) >droSec1.super_0 5395253 104 + 21120651 GUUUUUAUGCCG-UUUGUUAGUCUUUUUUGUGCC-AUAAAUAGUAGGGCUAACUGAUUAAAGCGGAAAACAACUUGUUCUUUUCGGUUUUGAUUAAUCUGUUCUUC ............-...(((((((((..((((...-....)))).)))))))))((((((((((.(((((.((....)).))))).))))))))))........... ( -22.80, z-score = -2.07, R) >droYak2.chr3R 10245851 106 - 28832112 GUUUUUAUGCCGUUUUGUUCGUUUUUUUUCGACACAUAUGCAUUAGGGCUAACUGAUUAACGCCGAAAACAACUUGUUCUUUUCGGUUUUGAUUAAUCUUUUCUUC (((((.((((.....((((((........))).)))...)))).)))))....(((((((.((((((((.((....)).)))))))).)))))))........... ( -22.60, z-score = -2.83, R) >droEre2.scaffold_4770 2346214 105 + 17746568 GUUUUUAUGCCGUUUUGUUGGUCUUUUGUGAGCA-AUAAAUAGUAGGGCUAGCUGAUUAAAGCCGAAAACAACUUGUUCUUUUCGGUUUUAAUUAAUCUCUUCUUC ........(((.((((((((.((......)).))-)))))....).)))....((((((((((((((((.((....)).))))))))))))))))........... ( -28.30, z-score = -3.70, R) >consensus GUUUUUAUGCCGUUUUGUUGGUCUUUUUUGAGCA_AUAAAUAGUAGGGCUAACUGAUUAAAGCCGAAAACAACUUGUUCUUUUCGGUUUUGAUUAAUCUUUUCUUC ................(((((((((...................)))))))))((((((((((((((((.((....)).))))))))))))))))........... (-19.53 = -19.89 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:46 2011