| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,218,803 – 6,218,906 |
| Length | 103 |
| Max. P | 0.706516 |
| Location | 6,218,803 – 6,218,906 |
|---|---|
| Length | 103 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 73.82 |
| Shannon entropy | 0.50540 |
| G+C content | 0.45349 |
| Mean single sequence MFE | -24.31 |
| Consensus MFE | -13.07 |
| Energy contribution | -14.17 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.706516 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6218803 103 - 27905053 CGGAAUUCGAUUCGUAACAAAUUCGAAUUUCGCAUUUCAGUUGAUUCAACAA---------CCAACCAACACACAAACGUGCACACGUGCCGGAUGGAUUGCUUGGCAACAG .(((((((((............)))))))))(((.((((((((......)))---------)...............((.(((....)))))..)))).))).((....)). ( -24.90, z-score = -1.50, R) >droSim1.chr3R 12338851 103 + 27517382 CGGAAUUCGAUUCGUAACAAAUUCGAAUUUCGCAUUUCAGUUGAUUCAACAG---------CUAACCAACACACAAACGUGCACACGUGCCGGACGGAUUGCUUGGCAACAG .(((((((((............)))))))))(((.((((((((......)))---------))..............((.(((....)))))...))).))).((....)). ( -25.80, z-score = -1.76, R) >droSec1.super_0 5394044 103 + 21120651 CGGAAUUCGAUUCGUAACAAAUUCGAAUUUCGCAUUUCAGUUGAUUCAACAG---------CUAACCAACACACAAACGUGCACACGUGCCGGACGGAUUGCUUGGCAACAG .(((((((((............)))))))))(((.((((((((......)))---------))..............((.(((....)))))...))).))).((....)). ( -25.80, z-score = -1.76, R) >droYak2.chr3R 10244622 112 - 28832112 CGGAAUUCGAUGCGCAACAAAUUCGAAUUUCGCAUUUCAGUUGAUUCAACAACUAAGCAACCUAACCAACACACAAACGUGCACACGUGCCAGAUGGAUUGCUUGGCAACAG .(((((((((............)))))))))((.....(((((......)))))((((((................((((....)))).((....)).)))))).))..... ( -24.50, z-score = -0.99, R) >droEre2.scaffold_4770 2344980 103 + 17746568 CGGAAUUCGAUUCGUAACAAAAUCGAAUUUCGCAUUUCAGUUGAUUCAACAA---------CUAACCAACACACAAACGUGCACACGUGCCGGAUGGAUUGCUUGGCAACAG .(((((((((((........)))))))))))(((..(((((((......)))---------))..........((..((.(((....)))))..)))).))).((....)). ( -27.80, z-score = -2.73, R) >droAna3.scaffold_13340 940127 94 - 23697760 CGCAAUUCGACCCG-ACCCGACUCGA--UUCGAUGAAAUGUUUAUG---------------CCAGCACCACUACAAACGUGUGCACGUGCCGGAUGGAUUGCUUGGCAACAG ......((((..((-(......))).--.)))).....(((...((---------------(((((((((((....((((....))))...)).)))..))).)))))))). ( -23.00, z-score = -0.22, R) >droWil1.scaffold_181089 12279458 95 + 12369635 --CGAAUAUAAACACUGCAAAUACA---UACAUACAUAGGUUCCUAUGA------------AUUUUUGCCAAUGAAACGUGUGCACGUGUCGUACGAAACGCUUGGCAACCA --.......................---......(((((....))))).------------....(((((((.(.....(((((.......))))).....))))))))... ( -18.40, z-score = -0.08, R) >consensus CGGAAUUCGAUUCGUAACAAAUUCGAAUUUCGCAUUUCAGUUGAUUCAACAA_________CUAACCAACACACAAACGUGCACACGUGCCGGAUGGAUUGCUUGGCAACAG ((((((((((............)))))))))).......(((..................................((((....))))((((..(.....)..))))))).. (-13.07 = -14.17 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:44 2011