| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,202,633 – 6,202,745 |
| Length | 112 |
| Max. P | 0.956302 |
| Location | 6,202,633 – 6,202,745 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 93.43 |
| Shannon entropy | 0.09019 |
| G+C content | 0.32634 |
| Mean single sequence MFE | -21.84 |
| Consensus MFE | -20.95 |
| Energy contribution | -20.84 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956302 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6202633 112 - 27905053 UAGUUCUCAAAACAUUUCACUUUUCCUUUCAAAACCAAGGAAUGCACAUCAAUUCAUUUGAAAUUAGGUUUCGUAAGCUUUCUAUGUUCCUUCCGAAAUUUGGAGAAGUGUA .................(((((((((..........(((((((.....((((.....))))...((((...(....)...)))).))))))).........))))))))).. ( -22.01, z-score = -1.62, R) >droSim1.chr3R 12326329 111 + 27517382 UAGUUCU-AAAACAUUUCACUUUUCCUUUUAAAACCAAGGAAUGCGCAUCAAUCCAUUUGAAAUUAGGCUUCGUAAGCUAUCUAUGUUCCUUCCAAAAUUUGGAAAAGUGUA .......-.........(((((((((..........(((((((.....((((.....)))).....((((.....))))......))))))).........))))))))).. ( -22.91, z-score = -2.72, R) >droSec1.super_0 5381025 111 + 21120651 UAGUUCU-AAAGCAUUUAACUUUUCCUUUCAAAACCAAGGAAUGCGCAUCAAUCCAUUUGAAAUUAGGCUUCGUAAGCUAUCUAUGUUCCUUACAAAAUUUGGAAAAGUGUA .......-..........((((((((..........(((((((.....((((.....)))).....((((.....))))......))))))).........))))))))... ( -20.61, z-score = -1.47, R) >consensus UAGUUCU_AAAACAUUUCACUUUUCCUUUCAAAACCAAGGAAUGCGCAUCAAUCCAUUUGAAAUUAGGCUUCGUAAGCUAUCUAUGUUCCUUCCAAAAUUUGGAAAAGUGUA .................(((((((((..........(((((((.....((((.....)))).....((((.....))))......))))))).........))))))))).. (-20.95 = -20.84 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:43 2011