| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,177,850 – 6,177,953 |
| Length | 103 |
| Max. P | 0.596883 |
| Location | 6,177,850 – 6,177,953 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 96.50 |
| Shannon entropy | 0.06167 |
| G+C content | 0.42136 |
| Mean single sequence MFE | -24.76 |
| Consensus MFE | -21.82 |
| Energy contribution | -21.98 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.596883 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6177850 103 + 27905053 CAUCUCUUUCGCACUGUUCUCUUUCGUCUCCGAGGUUUCGGCAACCUUUGUUGCAGCAACAUGGCAGCAAAGAAAGAAAUUAGUGAAACAAAAAUCAAAGCAA ...........(((((...((((((((..(((......)))..)).((((((((.........))))))))))))))...))))).................. ( -24.10, z-score = -1.20, R) >droSim1.chr3R 12301771 103 - 27517382 CAUCUCUUUCGCACGGUUCUCUUUCGUCUCCGAGGUUUCGGCAACCUUUGUUGCAGCAACAUGGCAGCAAAGAAAGAAAUUAGUGAAACAAAAAUCAAAGCAA ......((((((..((((.((((((((..(((......)))..)).((((((((.........)))))))))))))))))).))))))............... ( -23.20, z-score = -0.82, R) >droSec1.super_0 5356908 103 - 21120651 CAUCUCUUUCGCACGGUUCUCUUUCGUCUCCGAGGUUUCGGCAACCUUUGUUGCAGCAACAUGACAGCAAAGAAAGAAAUUAGUGAAACAAAAAUCAAAGCAA ......((((((..((((.((((((((..(((......)))..)).(((((((((......)).))))))))))))))))).))))))............... ( -22.20, z-score = -0.75, R) >droYak2.chr3R 10205031 103 + 28832112 CAUCUCUUUCGCACUGUUCUCUUUCGUCUCCGAGGUUUCGGCAACCUUUGUUGCUGCAACAUAGCAGCAAAGAAAGAAAUUAGCGAAACAAAAAUCAAAGCAA ......((((((...(((.((((((((..(((......)))..)).....(((((((......))))))).)))))))))..))))))............... ( -28.00, z-score = -2.82, R) >droEre2.scaffold_4770 2307535 103 - 17746568 CAUCUCUUUCGCACCGUUCUCUUUCCUCUCCGAGGUUUCGGCAACCUUUGUUGCUGCAACAUGGCAGCAAAGAAAGAAAUUAGCGAAACAAAAAUCAAAUCAA ......((((((...(((.((((((......((((((.....))))))..(((((((......))))))).)))))))))..))))))............... ( -26.30, z-score = -2.71, R) >consensus CAUCUCUUUCGCACGGUUCUCUUUCGUCUCCGAGGUUUCGGCAACCUUUGUUGCAGCAACAUGGCAGCAAAGAAAGAAAUUAGUGAAACAAAAAUCAAAGCAA ......((((((...(((.((((((((..(((......)))..)).((((((((.........)))))))))))))))))..))))))............... (-21.82 = -21.98 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:42 2011