Locus 9351

Sequence ID dm3.chr3R
Location 6,164,453 – 6,164,521
Length 68
Max. P 0.837273
window12817

overview

Window 7

Location 6,164,453 – 6,164,521
Length 68
Sequences 3
Columns 68
Reading direction reverse
Mean pairwise identity 91.04
Shannon entropy 0.12154
G+C content 0.46991
Mean single sequence MFE -14.00
Consensus MFE -13.22
Energy contribution -13.00
Covariance contribution -0.22
Combinations/Pair 1.06
Mean z-score -1.48
Structure conservation index 0.94
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.86
SVM RNA-class probability 0.837273
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 6164453 68 - 27905053
UCUGAACUUUUCCAUCAUGUUCUUCAUCACUGGGGCUCGCUAUAAUAAUGCGGCGACGUUUCACGCUA
...((((...........))))........((..((((((..((....))..)))).))..))..... ( -13.40, z-score =  -1.06, R)
>droSim1.chr3R 12292820 65 + 27517382
CCUGAACUUUCA---CAUGUUCUUCAUCACUGGAGCUCGCUAUAACAAUGCGGCGACGUUUCACGCUA
...((((.....---...))))........((((((((((..((....))..)))).))))))..... ( -14.30, z-score =  -1.66, R)
>droSec1.super_0 5350169 65 + 21120651
CCUGAACUUUCC---UAUGUUCUUCAUCACUGGAGCUCGCUAUAACAAUGCGGCGACGUUUCACGCUA
...((((.....---...))))........((((((((((..((....))..)))).))))))..... ( -14.30, z-score =  -1.73, R)
>consensus
CCUGAACUUUCC___CAUGUUCUUCAUCACUGGAGCUCGCUAUAACAAUGCGGCGACGUUUCACGCUA
...((((...........))))........((((((((((..((....))..)))).))))))..... (-13.22 = -13.00 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:40 2011