Locus 9350

Sequence ID	dm3.chr3R
Location	6,164,342 – 6,164,420
Length	78
Max. P	0.541448

overview

Window 6

Location	6,164,342 – 6,164,420
Length	78
Sequences	4
Columns	91
Reading direction	forward
Mean pairwise identity	76.13
Shannon entropy	0.36355
G+C content	0.42949
Mean single sequence MFE	-19.12
Consensus MFE	-11.85
Energy contribution	-11.60
Covariance contribution	-0.25
Combinations/Pair	1.35
Mean z-score	-1.53
Structure conservation index	0.62
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.10
SVM RNA-class probability	0.541448
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 6164342 78 + 27905053
AAUAGGUUUGCGACAGAUGAGGAAACGCAUUAAGUUGGAGAAAUCGUUCGAAAGAACUCCCAAAAAGAAGGUCCAGAC-------------
.....(((((.(((.((((.(....).))))...((((.((....((((....)))))))))).......))))))))------------- ( -22.00, z-score =  -3.42, R)
>droSim1.chr3R 12296934 78 - 27517382
AAAAGGUUUGCGACAGAUGAGGAAACGCAUUAAGUUGGAGAAAUCAAUCGAAAGAACUCCCAAAAAGAAGUUCCAGAG-------------
......((((.(((.((((.(....).))))...((((.((......((....))..))))))......))).)))).------------- ( -14.10, z-score =  -1.01, R)
>droSec1.super_0 5353123 78 - 21120651
AAAAGGUUUGCGACAGAUGAGGAAACGCAUUAAGUUGGAGAAAUCAUUCGAAAGAACUCCCAAAAAGAAGUUCCAGAG-------------
......((((.(((.((((.(....).)))).....((((......(((....))))))).........))).)))).------------- ( -15.70, z-score =  -1.40, R)
>droEre2.scaffold_4770 2304610 90 - 17746568
AUUGGGUUUGCGGCAAAUGAGGAAGCGCGUUAAGCUGGAGGACCCUGAUGAGAGAUCUCUCAAAA-GAUCUCCCAAAACGAAGGCCAAGUC
...((((((.((((.((((.(....).))))..))))..))))))...((.(((((((......)-)))))).))................ ( -24.70, z-score =  -0.30, R)
>consensus
AAAAGGUUUGCGACAGAUGAGGAAACGCAUUAAGUUGGAGAAAUCAUUCGAAAGAACUCCCAAAAAGAAGUUCCAGAG_____________
....(((((.((((.((((.(....).))))..)))).))).....(((....)))................))................. (-11.85 = -11.60 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:40 2011