| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,133,401 – 6,133,491 |
| Length | 90 |
| Max. P | 0.659509 |
| Location | 6,133,401 – 6,133,491 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 72.49 |
| Shannon entropy | 0.50359 |
| G+C content | 0.48681 |
| Mean single sequence MFE | -11.95 |
| Consensus MFE | -8.04 |
| Energy contribution | -7.85 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.40 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.659509 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6133401 90 + 27905053 ACCAUCAUUACCACCACCCAAAUGAACAGCACAAGUUCUAGACUGGAGCCCCGAGGUUCCCUGCGAUCCGAUCCCAGAUCCCCUAUACCA-------- ....(((((...........)))))...(((..((((...))))((((((....)))))).)))((((.(....).))))..........-------- ( -14.60, z-score = -1.19, R) >droSim1.chr3R 12263137 90 - 27517382 ACCAUCAUUACCACCACCAAAAUGAACAGCACAAGUUCUAGACUGGAGCCUCGAGGUUCCCUGCGAUCCGAUCCCAAAUCCCCAAUACCA-------- ....(((((...........)))))...(((..((((...))))((((((....)))))).)))..........................-------- ( -12.80, z-score = -0.70, R) >droSec1.super_0 5321820 90 - 21120651 ACCAUCAUUACCACCACCAAAAUGAACAGCACAAGUUCUAGACUGGAGCCCCGAGGUUCCCUGCGAUCCGAUCCCAGAUCCCCAAUACCA-------- ....(((((...........)))))...(((..((((...))))((((((....)))))).)))((((.(....).))))..........-------- ( -14.60, z-score = -1.33, R) >droYak2.chr3R 10169750 98 + 28832112 ACCAUCAUUACCACCACCAAAAUGAACAGCACAAGUUCUAGGCUGGAGCCCCCAGGUUCCCUACAAUCCAAUCCCCAGCUCCCAGAUUCCCAAUAAGA ....(((((...........)))))..(((...(((.....)))((((((....)))))).................))).................. ( -12.10, z-score = 0.04, R) >droEre2.scaffold_4770 2273077 83 - 17746568 ACCAUCAUUACCACCACCAAAAUGAACAGCACAAGUUCUAGACUGGA-UCCCGAGGUUCCCUACGAUCCAA-CCCCAGCUCCCAG------------- ....(((((...........)))))..(((...((((...))))(((-((...(((...)))..)))))..-.....))).....------------- ( -12.30, z-score = -1.55, R) >droWil1.scaffold_181130 1687885 72 - 16660200 UCCACCA--ACCAUCAUCAUCAUGAGCAUAAUAAGUUUUAA----GAGCUCGACAGAUCCAUA-GAUUCGAUUUAAUAA------------------- .......--.............(((((.(((......))).----..))))).(..(((....-)))..).........------------------- ( -5.30, z-score = -0.03, R) >consensus ACCAUCAUUACCACCACCAAAAUGAACAGCACAAGUUCUAGACUGGAGCCCCGAGGUUCCCUACGAUCCGAUCCCAAAUCCCCAAUACCA________ .......................((((.......))))......((((((....))))))...................................... ( -8.04 = -7.85 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:39 2011