Locus 9348

Sequence ID dm3.chr3R
Location 6,131,797 – 6,131,868
Length 71
Max. P 0.589939
window12814

overview

Window 4

Location 6,131,797 – 6,131,868
Length 71
Sequences 10
Columns 77
Reading direction reverse
Mean pairwise identity 62.40
Shannon entropy 0.74900
G+C content 0.61759
Mean single sequence MFE -28.82
Consensus MFE -11.16
Energy contribution -10.35
Covariance contribution -0.81
Combinations/Pair 1.67
Mean z-score -0.85
Structure conservation index 0.39
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.20
SVM RNA-class probability 0.589939
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 6131797 71 - 27905053
AUAGCUGCUUCCACUUGUGGUA---GUUGUGGUGGCGGUGGUCACCGAGCUGGGGGCACCACUGGCGGACACAU---
..(((((((.........))))---)))(((.((.(((((((..((.......))..))))))).))..)))..--- ( -24.70, z-score =   0.46, R)
>droSim1.chr3R 12261533 71 + 27517382
AUAGCUGCUUCCACUUGUUGUA---GUUGUGGUGGCGGUGGUCACCGAGCUGGGGGCACCACUGCCGGGUACAU---
((((((((...........)))---)))))..((((((((((..((.......))..)))))))))).......--- ( -26.50, z-score =  -0.19, R)
>droSec1.super_0 5320216 71 + 21120651
AUAGCUGCUUCCACUUGUGGUA---GUUGUGGUGGCGGUGGUCACCGAGCUGGGGGCACCACUGCCGGGCACAU---
..(((((((.........))))---)))(((.((((((((((..((.......))..))))))))).).)))..--- ( -28.10, z-score =  -0.09, R)
>droYak2.chr3R 10168140 71 - 28832112
AUAACUGCUUCCGCUUGUCGUA---GUUGUGGUGGCGGUGGUCACCAAGCUGGCAGCACCACUGCCAGCCACAU---
((((((((...........)))---)))))((((((....))))))..((((((((.....)))))))).....--- ( -30.40, z-score =  -2.14, R)
>droEre2.scaffold_4770 2271449 71 + 17746568
AUAACUGCUUCCGCUUGUCGUG---GUUGUGGUCGCGGUGGUCACCAAGCUGGCAGCACCACUGCCAGCCACAU---
...((..(..((((.....)))---)..)..))...(((....)))..((((((((.....)))))))).....--- ( -27.00, z-score =  -1.06, R)
>droAna3.scaffold_13340 22742263 68 + 23697760
GUAGCUGCUUCCACUUCCGGUG---GUGGUUGUUGUGGUGGUGGGGCCGCUACUCGGAGCAGCACUCG-CGC-----
...((((((((((((......)---)))......(((((((.....)))))))..)))))))).....-...----- ( -28.00, z-score =  -0.80, R)
>dp4.chr2 23461077 74 + 30794189
GUAGCUGCUGCCACUUGUGGUG---GUGGUGGCUGUAGUCACGGCGCUGGCUGCCCCACUCGCACCACUGCCCCCCU
.((((..(..((((.....)))---)..)..)))).......((((.(((.(((.......)))))).))))..... ( -31.20, z-score =  -0.27, R)
>droPer1.super_0 10626848 74 + 11822988
GUAGCUGCUGCCACUUGUGGUG---GUGGUGGCUGUAGUCACGGCGCUGGCCGCCCCACUCGCACCACUGGCCCCCU
.........((((..(((((((---(.(((((((...((....))...))))))))))).))))....))))..... ( -30.80, z-score =   0.37, R)
>droWil1.scaffold_181130 1686301 68 + 16660200
AUAGCUACUGCCACCACUUGUU---GUGGUCGUGGUGGUCCCUGCGCUAGUCCCAGCAAUAGUUCCAAUUG------
...(((((..(.(((((.....---))))).)..)))))......(((......)))..............------ ( -19.60, z-score =  -1.40, R)
>anoGam1.chr2R 33561265 74 - 62725911
AUUGCUGCUGCUGCCUCCGGUAUCGGUGGUAGCGGUGGUGGUGGUAGUGCUGCUGCCGCCAGUGCCCACCGCAU---
..(((....((((((.(((....))).))))))((((((((((((((.....)))))))))....)))))))).--- ( -41.90, z-score =  -3.42, R)
>consensus
AUAGCUGCUUCCACUUGUGGUA___GUGGUGGUGGCGGUGGUCACCCAGCUGGCGGCACCACUGCCAGCCACAU___
...(((((..((((..............))))..)))))...................................... (-11.16 = -10.35 +  -0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:38 2011