| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,096,034 – 6,096,150 |
| Length | 116 |
| Max. P | 0.899945 |
| Location | 6,096,034 – 6,096,150 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 97.76 |
| Shannon entropy | 0.03949 |
| G+C content | 0.53793 |
| Mean single sequence MFE | -27.06 |
| Consensus MFE | -24.94 |
| Energy contribution | -25.54 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.899945 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6096034 116 - 27905053 CAUGUCGAUGGCUGGCUGCACAUCCCUUCCAGCUUUCAUCCGAAUGCAUCCAGACAAACAAACACCCGCAAACGCAAACACACCUCCUCCGUGCAAACAGCUCAGCCGAGCAACAU ..(((((.((((((..(((((..........((.(((....))).))....................((....))...............)))))..)))).))..))).)).... ( -25.60, z-score = -1.66, R) >droSim1.chr3R 12225120 116 + 27517382 CAUGUCGAUGGCUGGCUGCACAUCCCUUCCAGCUUUCAUCCGAAUGCAUCCAGACAAACAAACACCCGCAAACGCAAACACACCUCCUCCGUGCAAACAGCUCAGCGGAGCGACAU .((((((.((((((..(((((..........((.(((....))).))....................((....))...............)))))..)))).))......)))))) ( -27.90, z-score = -1.40, R) >droSec1.super_0 5284673 116 + 21120651 CAUGUCGAUGGCUGGCUGCACAUCCCUUCCAGCUUUCAUCCGAAUGCAUCCAGACAAACAAACACCCGCAAACGCAAACACACCUCCUCCGUGCAAACAGCUCAGACGAGCGACAU .((((((.((((((..(((((..........((.(((....))).))....................((....))...............)))))..)))).))......)))))) ( -27.90, z-score = -2.18, R) >droYak2.chr3R 10131431 116 - 28832112 CAUGUCGAUGGCUGGCUGCACAUCCCUUCCAGCUUUCAUCCGAAUGCAUCCAGACAAACAAACACCCGCAAACGCAAACACACCUCCUCCGUGCAAACAGCUCAUCCGAGCGACAU .(((((((((((((..(((((..........((.(((....))).))....................((....))...............)))))..)))).)))).....))))) ( -28.20, z-score = -2.72, R) >droEre2.scaffold_4770 2235287 116 + 17746568 CAUGUCGAUGGCUGGCUGCACAUCCCUUCCAGCUUUCAUCCCACUGCAUCCAGACAAACAAACACCCGCAAACGCAAACACACCUCCUCCGUGCAAACAGCUCAUCCGAGCGACAU .(((((((((((((..(((((......................(((....)))..............((....))...............)))))..)))).)))).....))))) ( -25.70, z-score = -2.23, R) >consensus CAUGUCGAUGGCUGGCUGCACAUCCCUUCCAGCUUUCAUCCGAAUGCAUCCAGACAAACAAACACCCGCAAACGCAAACACACCUCCUCCGUGCAAACAGCUCAGCCGAGCGACAU .((((((.((((((..(((((..........((.(((....))).))....................((....))...............)))))..)))).))......)))))) (-24.94 = -25.54 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:36 2011