| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,091,058 – 6,091,149 |
| Length | 91 |
| Max. P | 0.976268 |
| Location | 6,091,058 – 6,091,149 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 76.81 |
| Shannon entropy | 0.42791 |
| G+C content | 0.43629 |
| Mean single sequence MFE | -27.63 |
| Consensus MFE | -17.80 |
| Energy contribution | -18.13 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.95 |
| SVM RNA-class probability | 0.976268 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6091058 91 + 27905053 CGCUCUGAUCAGAACGGG---AAGAAGAAGCAGCCGCAUUUGCAGCUGCGCCGAGCGAUCAUUUUCGCAUACUUCUUUCUUAAUUUGUUUUUGC---- .((...((.((((..(((---((((((..(((((.((....)).))))).....((((......))))...)))))))))...)))).))..))---- ( -30.90, z-score = -2.27, R) >droSim1.chr3R 12219785 91 - 27517382 CGUUCUGAUCAGAACAGG---AAGAAGAAGCAGUCGCAUUUGCAGCUGCGCCCAGCGAUCAUUUUCGCAUACUUCUUUCUUAAUUUGUUUUUGC---- .(((((....)))))(((---((((((..(((((.((....)).))))).....((((......))))...)))))))))..............---- ( -31.70, z-score = -3.70, R) >droSec1.super_0 5279537 91 - 21120651 CGUUCUGAUCAGAACAGG---AAGAAGAAGCAGUCGCAUUUGCAGCUGCGCCGAGCGAUCAUUUUCGCAUACUUCUUUCUUAAUUUGUUUUUGC---- .(((((....)))))(((---((((((..(((((.((....)).))))).....((((......))))...)))))))))..............---- ( -31.70, z-score = -3.17, R) >droYak2.chr3R 10126210 91 + 28832112 --CUCUGAUCAGAACGGGAGGAAGAAGAAGAAGCAGCAUUUGCAGCUGCGGCAAGCGAUCAUUUUCGCAUACUU-UUUCUUAAUUUGUUUUUGC---- --........((((((((...(((((((((..(((((.......))))).....((((......))))...)))-))))))..))))))))...---- ( -27.20, z-score = -1.72, R) >droEre2.scaffold_4770 2230203 88 - 17746568 --CUCUGAUCAGAACGGG---AAGAAGAAGCAGCGGCAUUUGCAGCUGCGCCAAGCGAUCAUUUUCGCAUACUU-UUUCUUAAUUUGUUUGUGC---- --.......((((..(((---((((((..(((((.((....)).))))).....((((......))))...)))-))))))..)))).......---- ( -27.60, z-score = -1.70, R) >droVir3.scaffold_13047 18168959 94 - 19223366 UGAUUUGAUUUGUGCGUA---AAAGCUAAUCAGUUGAGCAAGCCGCU-CGCCAAUUAAUCUCUCUCACUCUAACACUUCUGUAUAUGUUUGUAUGCAU .(((((((((...((...---...)).)))))(.(((((.....)))-)).)....))))...................(((((((....))))))). ( -16.70, z-score = -0.16, R) >consensus CGCUCUGAUCAGAACGGG___AAGAAGAAGCAGCCGCAUUUGCAGCUGCGCCAAGCGAUCAUUUUCGCAUACUUCUUUCUUAAUUUGUUUUUGC____ ..........((((((((...((((((..(((((.((....)).))))).....((((......)))).......))))))..))))))))....... (-17.80 = -18.13 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:35 2011